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© Nanjiang Shu

SciLifeLab Logotype Stockholm University logotype

Prediction in text file can be found in query.predfrag1d

The sequence file in FASTA format can be found in seq.fa

Sequence and predicted secondary structure and shape strings

Description of the result:
Num Residue index in the sequence
AA One-letter amino acid code
Sec Predicted three state secondary structure, (H, S and R).
ConfSec Confidence of the predicted secondary structure.
S8 Predicted 8 state Shape String, (R, S, U, V, A, K, G and T).
ConfS8 Confidence of the predicted 8 state Shape String.
S3 Predicted 3 state Shape String (R, S, U and V to S; A and K to H; G and T to T).
ConfS3 Confidence of the predicted 3 state Shape String.

No. AA Sec ConfSec S8 ConfS8 S3 ConfS3
1 M R 0.874 A 1.000 H 1.000
2 D R 0.681 A 0.636 H 0.700
3 T H 0.982 A 1.000 H 1.000
4 K H 0.993 A 1.000 H 1.000
5 L H 1.000 A 1.000 H 1.000
6 Q H 0.983 A 1.000 H 1.000
7 T H 0.989 A 1.000 H 1.000
8 K H 0.975 A 0.930 H 0.992
9 L H 0.918 A 0.959 H 0.977
10 T H 0.773 A 0.896 H 0.923
11 L H 0.676 A 0.796 H 0.872
12 L R 0.714 R 0.420 S 0.686
13 P R 0.783 R 0.627 S 0.726
14 E R 0.860 V 0.353 S 0.574
15 S R 0.938 S 0.529 S 0.945
16 P R 0.940 R 0.865 S 0.946
17 G R 0.573 S 0.404 S 0.582
18 C S 0.705 S 0.647 S 0.810
19 Y S 0.730 S 0.620 S 0.789
20 I S 0.789 S 0.687 S 0.887
21 Y S 0.735 S 0.521 S 0.959
22 K S 0.669 S 0.729 S 0.815
23 D R 0.746 S 0.596 S 0.921
24 E R 0.809 A 0.826 H 0.882
25 N R 0.880 K 0.468 H 0.848
26 N R 0.931 T 0.894 T 0.921
27 E R 0.686 R 0.625 S 0.995
28 I S 0.951 R 0.816 S 0.977
29 L S 0.984 A 0.367 H 0.749
30 Y S 0.984 S 0.880 S 1.000
31 I S 0.860 S 0.875 S 0.941
32 G S 0.735 S 0.583 S 0.797
33 K S 0.669 S 0.625 S 0.726
34 S S 0.644 S 0.469 S 0.626
35 K R 0.651 A 0.860 H 0.892
36 C R 0.565 S 0.529 S 0.641
37 L H 0.907 A 0.922 H 0.945
38 K H 0.905 A 0.940 H 0.961
39 N H 0.938 A 0.941 H 0.962
40 R H 0.891 A 0.980 H 0.996
41 V H 0.894 A 0.920 H 0.944
42 K H 0.889 A 0.920 H 0.961
43 S H 0.805 A 0.776 H 0.890
44 Y H 0.768 A 0.766 H 0.829
45 F H 0.603 A 0.565 H 0.676
46 H R 0.593 K 0.295 H 0.680
47 S R 0.764 S 0.286 S 0.644
48 K R 0.699 A 0.475 H 0.625
49 Q R 0.650 S 0.488 S 0.614
50 I R 0.817 K 0.268 H 0.572
51 G R 0.758 T 0.415 T 0.635
52 K H 0.639 A 0.605 H 0.692
53 T H 0.714 A 0.651 H 0.712
54 A H 0.826 A 0.837 H 0.872
55 R H 0.843 A 0.826 H 0.863
56 L H 0.850 A 0.875 H 0.905
57 V H 0.883 A 0.833 H 0.869
58 R H 0.850 A 0.875 H 0.905
59 Q H 0.789 A 0.854 H 0.905
60 I H 0.588 A 0.469 H 0.591
61 R H 0.563 A 0.510 H 0.872
62 D H 0.556 A 0.460 H 0.582
63 L S 0.524 S 0.490 S 0.732
64 E S 0.563 S 0.479 S 0.618
65 L S 0.821 S 0.755 S 0.854
66 I S 0.886 S 0.792 S 0.905
67 I S 0.902 S 0.490 S 0.942
68 T S 0.660 S 0.755 S 0.925
69 T R 0.834 A 0.660 H 0.811
70 S R 0.757 S 0.408 S 0.644
71 E H 0.699 A 0.700 H 0.789
72 K H 0.876 A 0.900 H 0.961
73 E H 0.891 A 0.902 H 0.962
74 A H 0.860 A 0.843 H 0.877
75 L H 0.814 A 0.804 H 0.844
76 L H 0.783 A 0.765 H 0.810
77 L H 0.798 A 0.784 H 0.827
78 E H 0.845 A 0.824 H 0.861
79 M H 0.845 A 0.824 H 0.894
80 I H 0.845 A 0.804 H 0.861
81 L H 0.876 A 0.882 H 0.945
82 I H 0.879 A 0.942 H 0.963
83 Q H 0.863 A 0.885 H 0.930
84 K H 0.829 A 0.863 H 0.928
85 Y H 0.650 K 0.549 H 0.776
86 Q R 0.923 T 0.451 T 0.540
87 P R 0.751 R 0.647 S 0.709
88 P R 0.689 A 0.780 H 0.858
89 F R 0.580 S 0.412 S 0.759
90 N S 0.580 S 0.373 S 0.641
91 I S 0.588 S 0.694 S 0.797
92 Q S 0.816 S 0.541 S 0.850
93 L S 0.716 S 0.447 S 0.831
94 K R 0.745 R 0.447 S 0.605
95 E R 0.817 R 0.350 S 0.647
96 G R 0.875 T 0.341 T 0.551
97 T R 0.758 R 0.439 S 0.698
98 S R 0.602 S 0.463 S 0.845
99 Y R 0.621 S 0.256 S 0.812
100 P R 0.583 R 0.395 S 0.672
101 Y S 0.677 S 0.465 S 0.652
102 I S 0.789 S 0.744 S 0.852
103 K S 0.714 S 0.535 S 0.792
104 I S 0.677 S 0.571 S 0.787
105 T R 0.554 S 0.561 S 0.719
106 N R 0.733 A 0.452 H 0.705
107 E R 0.726 A 0.452 H 0.664
108 K R 0.783 A 0.500 H 0.767
109 N R 0.919 U 0.429 S 0.910
110 P R 0.821 A 0.533 H 0.630
111 H R 0.576 A 0.400 H 0.630
112 I S 0.576 S 0.511 S 0.821
113 E S 0.716 S 0.533 S 0.783
114 V S 0.770 S 0.628 S 0.772
115 V S 0.592 A 0.500 H 0.623
116 F H 0.573 A 0.619 H 0.685
117 E H 0.650 A 0.571 H 0.664
118 A H 0.669 A 0.619 H 0.726
119 K H 0.621 A 0.659 H 0.719
120 Q H 0.511 A 0.525 H 0.625
121 D R 0.751 K 0.263 H 0.605
122 G R 0.943 T 0.457 T 0.619
123 A R 0.847 R 0.270 S 0.454
124 H R 0.563 A 0.415 H 0.656
125 Y R 0.516 S 0.452 S 0.726
126 F R 0.535 S 0.333 S 0.644
127 G R 0.817 R 0.439 S 0.761
128 P R 0.802 R 0.452 S 0.685
129 Y R 0.875 R 0.463 S 0.949
130 P R 0.777 R 0.415 S 0.593
131 G R 0.770 R 0.286 S 0.603
132 R H 0.583 A 0.605 H 0.672
133 Y H 0.621 A 0.605 H 0.712
134 S H 0.677 A 0.628 H 0.752
135 A H 0.789 A 0.762 H 0.828
136 R H 0.789 A 0.762 H 0.869
137 Q H 0.860 A 0.833 H 0.931
138 T H 0.849 A 0.818 H 0.895
139 V H 0.891 A 0.933 H 0.955
140 D H 0.909 A 0.889 H 0.974
141 L H 0.940 A 0.953 H 0.992
142 I H 0.975 A 0.977 H 0.992
143 Q H 0.938 A 0.977 H 0.992
144 K H 0.901 A 0.905 H 0.971
145 L H 0.789 A 0.698 H 0.892
146 F H 0.658 A 0.548 H 0.685
147 P H 0.602 A 0.571 H 0.685
148 L H 0.621 A 0.628 H 0.712
149 C H 0.631 A 0.690 H 0.767
150 R R 0.565 S 0.605 S 0.732
151 C R 0.611 R 0.372 S 0.652
152 D R 0.764 A 0.415 H 0.593
153 G R 0.758 K 0.341 H 0.698
154 K R 0.875 R 0.585 S 0.824
155 P R 0.934 R 0.732 S 0.824
156 G R 0.957 T 0.300 T 0.496
157 R R 0.650 R 0.405 S 0.746
158 P S 0.648 R 0.636 S 0.895
159 C S 0.758 S 0.705 S 0.817
160 L S 0.776 S 0.659 S 0.739
161 Y S 0.721 S 0.477 S 0.680
162 Y S 0.594 S 0.432 S 0.641
163 H S 0.594 S 0.467 S 0.573
164 L H 0.593 A 0.568 H 0.680
165 G R 0.575 A 0.455 H 0.563
166 L S 0.538 S 0.568 S 0.680
167 C S 0.520 R 0.432 S 0.582
168 L R 0.520 A 0.591 H 0.719
169 G R 0.630 S 0.250 S 0.641
170 P R 0.648 R 0.455 S 0.582
171 C R 0.575 A 0.349 H 0.532
172 L H 0.565 A 0.325 H 0.582
173 R H 0.621 A 0.634 H 0.949
174 E H 0.592 A 0.643 H 0.890
175 I R 0.714 S 0.628 S 0.972
176 D R 0.944 R 0.933 S 0.993
177 P H 0.891 A 0.978 H 1.000
178 A H 0.909 A 0.951 H 1.000
179 V H 0.953 A 0.902 H 0.991
180 Y H 0.891 A 0.976 H 1.000
181 K H 0.926 A 1.000 H 1.000
182 A H 0.993 A 1.000 H 1.000
183 Q H 0.992 A 1.000 H 1.000
184 I H 0.974 A 0.976 H 1.000
185 H H 0.955 A 0.976 H 0.992
186 K H 0.917 A 0.927 H 0.991
187 I H 0.955 A 0.952 H 1.000
188 S H 0.860 A 0.952 H 0.971
189 R H 0.764 A 0.905 H 0.951
190 F H 0.707 A 0.762 H 0.890
191 L H 0.658 A 0.738 H 0.828
192 E R 0.714 K 0.439 H 0.740
193 G R 0.895 T 0.610 T 0.719
194 D R 0.821 R 0.286 S 0.582
195 V H 0.666 A 0.674 H 0.732
196 K H 0.812 A 0.886 H 0.915
197 P H 0.885 A 0.864 H 0.895
198 V H 0.922 A 0.864 H 0.934
199 K H 0.975 A 0.977 H 0.992
200 K H 0.974 A 0.976 H 1.000
201 K H 0.973 A 0.976 H 1.000
202 I H 0.929 A 0.949 H 1.000
203 Q H 0.968 A 0.974 H 0.990
204 A H 0.967 A 1.000 H 1.000
205 I H 0.921 A 0.972 H 1.000
206 M H 0.985 A 0.971 H 1.000
207 Q H 0.982 A 1.000 H 1.000
208 E H 0.982 A 1.000 H 1.000
209 A H 0.908 A 0.935 H 0.957
210 T H 0.930 A 0.967 H 0.984
211 D H 0.904 A 0.968 H 0.985
212 K H 0.828 A 0.903 H 0.985
213 L H 0.675 A 0.645 H 0.735
214 E H 0.624 A 0.581 H 0.652
215 F H 0.728 A 0.719 H 0.770
216 E H 0.788 A 0.806 H 0.869
217 R H 0.855 A 0.889 H 0.917
218 A H 0.877 A 0.889 H 1.000
219 A H 0.899 A 0.917 H 0.941
220 E H 0.921 A 0.917 H 0.941
221 Q H 0.899 A 0.861 H 0.965
222 R H 0.855 A 0.944 H 0.965
223 D H 0.859 A 0.919 H 0.989
224 K H 0.884 A 0.868 H 0.990
225 L H 0.827 A 0.789 H 0.877
226 H H 0.851 A 0.950 H 0.969
227 A H 0.856 A 0.805 H 0.866
228 I H 0.821 A 0.786 H 0.849
229 N H 0.817 A 0.878 H 0.908
230 E H 0.745 A 0.714 H 0.787
231 T H 0.751 A 0.744 H 0.812
232 I H 0.791 A 0.789 H 0.854
233 E H 0.765 A 0.821 H 0.858
234 K H 0.731 A 0.842 H 0.899
235 Q H 0.582 A 0.513 H 0.682
236 H R 0.491 R 0.410 S 0.571
237 I S 0.591 S 0.436 S 0.726
238 I S 0.691 S 0.500 S 0.776
239 F S 0.611 S 0.450 S 0.733
240 P R 0.592 A 0.439 H 0.572
241 G R 0.726 S 0.390 S 0.635
242 L R 0.602 R 0.488 S 0.614
243 K R 0.535 R 0.357 S 0.644
244 N R 0.650 A 0.262 H 0.582
245 R R 0.554 A 0.595 H 0.726
246 D R 0.538 A 0.455 H 0.641
247 I S 0.575 A 0.477 H 0.582
248 I S 0.559 A 0.356 H 0.573
249 G S 0.559 S 0.422 S 0.535
250 C S 0.629 S 0.578 S 0.745
251 Y S 0.611 S 0.400 S 0.687
252 E H 0.520 A 0.455 H 0.700
253 Q R 0.684 A 0.386 H 0.641
254 D R 0.849 K 0.295 H 0.661
255 N R 0.904 T 0.682 T 0.797
256 Y R 0.703 S 0.409 S 0.602
257 L S 0.714 S 0.442 S 0.772
258 S S 0.807 S 0.651 S 0.852
259 V S 0.794 S 0.810 S 0.869
260 F S 0.849 S 0.545 S 0.817
261 V S 0.909 S 0.800 S 0.936
262 F S 0.891 S 0.844 S 0.898
263 F S 0.891 S 0.756 S 0.917
264 V S 0.751 S 0.600 S 0.783
265 R S 0.714 S 0.310 S 0.644
266 N R 0.726 T 0.286 T 0.459
267 G R 0.764 T 0.548 T 0.705
268 A S 0.535 S 0.429 S 0.726
269 I S 0.565 R 0.410 S 0.660
270 N S 0.571 S 0.625 S 0.690
271 G R 0.671 R 0.625 S 0.711
272 R R 0.565 S 0.538 S 0.770
273 K S 0.554 S 0.500 S 0.623
274 W S 0.538 S 0.409 S 0.582
275 H S 0.594 S 0.444 S 0.592
276 V S 0.611 S 0.489 S 0.611
277 F S 0.576 S 0.600 S 0.821
278 Q R 0.594 R 0.578 S 0.783
279 V R 0.611 S 0.500 S 0.680
280 E R 0.739 R 0.227 S 0.641
281 K R 0.867 A 0.227 H 0.543
282 S R 0.922 S 0.605 S 0.832
283 L R 0.789 A 0.628 H 0.712
284 Q H 0.583 A 0.698 H 0.792
285 E H 0.733 A 0.721 H 0.872
286 D H 0.770 A 0.721 H 0.812
287 L H 0.807 A 0.814 H 0.912
288 A H 0.849 A 0.841 H 0.876
289 H H 0.856 A 0.844 H 0.898
290 F H 0.874 A 0.778 H 0.898
291 I H 0.891 A 0.909 H 0.934
292 N H 0.891 A 0.889 H 0.936
293 Q H 0.874 A 0.889 H 0.955
294 F H 0.874 A 0.711 H 0.898
295 Y H 0.677 A 0.605 H 0.672
296 E H 0.554 A 0.548 H 0.644
297 D R 0.543 U 0.683 S 0.782
298 P H 0.707 A 0.610 H 0.929
299 N R 0.802 A 0.476 H 0.644
300 N R 0.688 A 0.262 H 0.562
301 I R 0.621 S 0.488 S 0.698
302 Q R 0.758 R 0.425 S 0.733
303 P R 0.751 R 0.900 S 0.926
304 K R 0.551 A 0.575 H 0.905
305 E S 0.738 S 0.625 S 0.776
306 L S 0.856 S 0.829 S 0.866
307 L S 0.875 S 0.488 S 0.866
308 I S 0.738 S 0.756 S 1.000
309 A S 0.699 R 0.683 S 0.845
310 E R 0.936 A 0.450 H 0.561
311 K R 0.898 K 0.452 H 0.541
312 L R 0.882 R 0.488 S 0.952
313 D R 0.958 S 0.545 S 0.934
314 K H 0.885 A 0.932 H 0.954
315 L H 0.940 A 0.955 H 0.973
316 S H 0.944 A 0.955 H 0.993
317 L H 0.958 A 0.955 H 0.973
318 A H 0.958 A 0.977 H 0.993
319 E H 0.958 A 1.000 H 1.000
320 P H 0.885 A 0.977 H 0.993
321 L H 0.739 A 0.651 H 0.792
322 R R 0.751 T 0.512 T 0.592
323 K R 0.721 S 0.864 S 0.934
324 A S 0.758 R 0.523 S 0.993
325 C S 0.958 S 0.886 S 0.993
326 V S 0.863 S 0.744 S 0.932
327 F S 0.621 S 0.488 S 0.866
328 P R 0.786 R 0.769 S 0.880
329 Q R 0.811 A 0.487 H 0.615
330 K R 0.888 R 0.410 S 0.660
331 G R 0.863 T 0.622 T 0.757
332 G R 0.751 R 0.324 S 0.640
333 K R 0.536 R 0.378 S 0.571
334 K H 0.611 A 0.658 H 0.718
335 K H 0.751 A 0.750 H 0.797
336 Q H 0.879 A 0.902 H 0.929
337 I H 0.919 A 0.907 H 0.932
338 N H 0.957 A 0.976 H 0.992
339 L H 0.994 A 1.000 H 1.000
340 A H 0.977 A 0.977 H 0.993
341 N H 0.891 A 0.953 H 0.972
342 E H 0.922 A 0.977 H 1.000
343 N H 0.812 A 0.795 H 0.915
344 A H 0.856 A 0.911 H 0.955
345 K H 0.856 A 0.889 H 0.936
346 S H 0.786 A 0.800 H 0.840
347 T H 0.769 A 0.756 H 0.802
348 Y H 0.926 A 0.933 H 0.955
349 I H 0.926 A 0.933 H 0.993
350 A H 0.856 A 0.909 H 0.973
351 Y H 0.794 A 0.795 H 0.876
352 A H 0.769 A 0.682 H 0.817
353 K H 0.681 A 0.682 H 0.739
354 M H 0.695 A 0.674 H 0.792
355 K H 0.719 A 0.805 H 0.887
356 E H 0.622 A 0.538 H 0.660
357 Y H 0.527 A 0.526 H 0.673
358 D H 0.551 A 0.455 H 0.569
359 F H 0.626 A 0.786 H 0.859
360 E H 0.611 A 0.826 H 0.900
361 N H 0.576 A 0.611 H 0.821
362 Q H 0.611 A 0.533 H 0.611
363 L H 0.751 A 0.818 H 0.856
364 K R 0.587 A 0.750 H 0.797
365 N R 0.695 A 0.800 H 1.000
366 S R 0.874 G 0.000 T 0.000