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© Nanjiang Shu

SciLifeLab Logotype Stockholm University logotype

Prediction in text file can be found in query.predfrag1d

The sequence file in FASTA format can be found in seq.fa

Sequence and predicted secondary structure and shape strings

Description of the result:
Num Residue index in the sequence
AA One-letter amino acid code
Sec Predicted three state secondary structure, (H, S and R).
ConfSec Confidence of the predicted secondary structure.
S8 Predicted 8 state Shape String, (R, S, U, V, A, K, G and T).
ConfS8 Confidence of the predicted 8 state Shape String.
S3 Predicted 3 state Shape String (R, S, U and V to S; A and K to H; G and T to T).
ConfS3 Confidence of the predicted 3 state Shape String.

No. AA Sec ConfSec S8 ConfS8 S3 ConfS3
1 M R 0.874 A 0.000 H 0.000
2 K H 0.902 A 0.333 H 0.726
3 K H 0.611 A 0.750 H 0.797
4 L H 0.650 A 0.846 H 0.880
5 V H 0.891 A 0.882 H 0.911
6 T H 0.917 A 0.905 H 0.931
7 L H 0.919 A 0.923 H 0.946
8 L H 0.918 A 0.937 H 0.959
9 T H 0.941 A 0.943 H 0.988
10 I H 0.989 A 1.000 H 1.000
11 F H 0.991 A 1.000 H 1.000
12 C H 0.990 A 1.000 H 1.000
13 L H 0.888 A 0.872 H 0.902
14 A H 0.791 A 0.750 H 0.797
15 L H 0.724 A 0.667 H 0.726
16 L H 0.668 A 0.600 H 0.693
17 V H 0.551 A 0.467 H 0.611
18 G H 0.490 A 0.444 H 0.566
19 C R 0.720 K 0.500 H 0.700
20 G R 0.576 T 0.368 T 0.514
21 G R 0.611 S 0.467 S 0.611
22 T R 0.751 A 0.700 H 0.840
23 G R 0.565 S 0.800 S 0.840
24 T R 0.551 A 0.833 H 1.000
25 S R 0.611 S 0.750 S 0.797
26 D R 0.779 A 1.000 H 1.000
27 S R 0.695 A 1.000 H 1.000
28 D H 0.611 A 1.000 H 1.000
29 K H 0.541 A 0.500 H 0.582
30 K H 0.583 A 0.286 H 0.644
31 K H 0.587 A 0.333 H 0.630
32 V H 0.634 A 0.556 H 0.821
33 K S 0.631 K 0.727 H 0.778
34 V R 0.561 S 0.500 S 0.851
35 E R 0.821 A 0.522 H 0.788
36 P R 0.726 R 0.448 S 0.745
37 K S 0.668 S 0.457 S 0.816
38 A S 0.611 R 0.579 S 0.673
39 S R 0.575 S 0.477 S 0.739
40 N R 0.580 A 0.380 H 0.703
41 D R 0.812 K 0.263 H 0.560
42 S R 0.712 S 0.375 S 0.569
43 V S 0.790 S 0.768 S 0.938
44 K S 0.905 S 0.710 S 0.975
45 V S 0.951 S 0.985 S 1.000
46 E S 0.915 S 0.853 S 0.987
47 V S 0.868 S 0.833 S 0.973
48 K S 0.767 S 0.545 S 0.713
49 S R 0.695 T 0.318 T 0.504
50 G R 0.623 T 0.394 T 0.647
51 E R 0.724 S 0.657 S 0.833
52 Y S 0.901 S 0.667 S 0.947
53 S S 0.901 S 0.716 S 0.923
54 V S 0.712 S 0.652 S 0.960
55 I R 0.818 R 0.787 S 0.886
56 P R 0.728 R 0.509 S 0.621
57 E R 0.671 A 0.660 H 0.801
58 V R 0.656 R 0.373 S 0.624
59 T R 0.798 S 0.306 S 0.626
60 K R 0.798 R 0.451 S 0.608
61 D R 0.869 A 0.302 H 0.558
62 D R 0.903 K 0.273 H 0.559
63 S R 0.815 T 0.271 T 0.560
64 S R 0.593 R 0.415 S 0.695
65 T S 0.872 S 0.814 S 0.951
66 L S 0.964 S 0.831 S 0.952
67 A S 0.975 S 0.761 S 0.964
68 L S 0.976 S 0.889 S 1.000
69 T S 0.976 S 0.861 S 1.000
70 I S 0.998 S 0.861 S 0.989
71 N S 0.976 S 0.806 S 0.977
72 V S 0.976 S 0.875 S 1.000
73 S S 0.954 S 0.944 S 0.989
74 N S 0.832 S 0.861 S 0.977
75 T R 0.987 K 0.653 H 0.869
76 G R 0.976 R 0.625 S 0.845
77 K R 0.954 K 0.625 H 0.857
78 E R 0.899 S 0.667 S 0.833
79 K R 0.766 R 0.639 S 0.857
80 I S 0.877 S 0.819 S 0.977
81 V S 0.810 S 0.639 S 0.953
82 V S 0.645 S 0.792 S 0.941
83 D R 0.796 S 0.479 S 0.940
84 S R 0.623 A 0.686 H 0.767
85 Y R 0.645 A 0.638 H 0.863
86 A S 0.577 A 0.371 H 0.644
87 F S 0.498 S 0.414 S 0.681
88 E S 0.656 S 0.529 S 0.730
89 L S 0.711 S 0.542 S 0.773
90 Y S 0.766 S 0.653 S 0.821
91 E R 0.793 S 0.543 S 0.865
92 E R 0.880 A 0.735 H 0.823
93 D R 0.899 A 0.712 H 0.882
94 N R 0.922 T 0.723 T 0.801
95 G R 0.885 T 0.262 T 0.549
96 E R 0.618 R 0.508 S 0.814
97 K R 0.599 R 0.375 S 0.770
98 I R 0.643 S 0.413 S 0.808
99 K R 0.701 R 0.371 S 0.763
100 A H 0.525 A 0.547 H 0.650
101 E H 0.527 A 0.409 H 0.634
102 D H 0.506 A 0.368 H 0.582
103 V R 0.491 A 0.478 H 0.638
104 Y R 0.560 S 0.406 S 0.663
105 N R 0.705 S 0.485 S 0.721
106 R R 0.845 A 0.328 H 0.542
107 D R 0.793 S 0.333 S 0.562
108 I R 0.680 A 0.508 H 0.712
109 N R 0.680 A 0.565 H 0.763
110 T R 0.634 A 0.286 H 0.631
111 F R 0.662 S 0.348 S 0.713
112 E R 0.711 R 0.338 S 0.671
113 T R 0.617 A 0.449 H 0.613
114 E R 0.680 A 0.371 H 0.570
115 R R 0.550 A 0.352 H 0.601
116 L R 0.589 S 0.472 S 0.833
117 S R 0.866 R 0.611 S 0.893
118 A R 0.921 R 0.817 S 0.867
119 G R 0.952 T 0.943 T 0.976
120 K R 0.838 R 0.600 S 0.865
121 N S 0.748 S 0.686 S 0.926
122 V S 0.850 S 0.743 S 0.939
123 T S 0.895 S 0.714 S 0.828
124 G S 0.884 S 0.743 S 0.828
125 T S 0.963 S 0.771 S 1.000
126 I S 1.000 S 0.929 S 1.000
127 F S 1.000 S 0.887 S 1.000
128 F S 0.943 S 0.806 S 1.000
129 N S 0.777 S 0.694 S 0.965
130 I S 0.689 S 0.423 S 0.867
131 D R 0.875 S 0.451 S 0.588
132 P R 0.908 A 0.343 H 0.545
133 K R 0.929 A 0.457 H 0.570
134 K R 0.793 S 0.343 S 0.705
135 D R 0.606 S 0.521 S 0.855
136 Y S 0.866 S 0.847 S 1.000
137 K S 0.866 S 0.750 S 0.941
138 L S 0.866 S 0.625 S 0.965
139 V S 0.844 S 0.764 S 0.953
140 Y S 0.733 S 0.653 S 0.905
141 S R 0.689 S 0.542 S 0.989
142 Q R 0.744 R 0.681 S 0.785
143 E R 0.722 A 0.583 H 0.690
144 S R 0.673 A 0.408 H 0.661
145 Y R 0.646 S 0.294 S 0.671
146 G R 0.724 R 0.348 S 0.674
147 D R 0.800 S 0.262 S 0.561
148 S R 0.799 S 0.383 S 0.568
149 A R 0.716 A 0.617 H 0.740
150 E R 0.652 A 0.492 H 0.633
151 D R 0.664 S 0.417 S 0.597
152 E R 0.677 A 0.500 H 0.654
153 D R 0.658 R 0.338 S 0.582
154 I S 0.566 S 0.429 S 0.877
155 E S 0.702 S 0.580 S 0.875
156 L S 0.810 S 0.750 S 0.937
157 D S 0.803 S 0.455 S 0.921
158 L S 0.673 S 0.734 S 0.932
159 D R 0.795 S 0.559 S 0.881
160 L H 0.639 A 0.737 H 0.816
161 S H 0.625 A 0.821 H 0.890
162 K H 0.646 A 0.750 H 0.859
163 Y H 0.673 A 0.483 H 0.716
164 A H 0.632 A 0.621 H 0.731
165 D H 0.605 A 0.860 H 0.967
166 S H 0.666 A 0.356 H 0.648
167 T H 0.670 A 0.738 H 0.843
168 K H 0.678 A 0.746 H 0.903
169 V H 0.659 A 0.615 H 0.787
170 F H 0.570 A 0.597 H 0.666
171 D H 0.600 A 0.588 H 0.785
172 E H 0.657 A 0.386 H 0.595
173 S H 0.907 A 0.928 H 0.963
174 Q H 0.931 A 0.971 H 1.000
175 K H 0.965 A 0.972 H 0.989
176 A H 0.987 A 1.000 H 1.000
177 A H 0.987 A 0.986 H 1.000
178 T H 0.954 A 0.972 H 0.989
179 A H 0.965 A 0.986 H 1.000
180 F H 0.943 A 0.931 H 0.965
181 I H 0.855 A 0.833 H 0.869
182 D H 0.777 A 0.847 H 0.917
183 V H 0.689 A 0.611 H 0.726
184 Q H 0.550 A 0.479 H 0.588
185 F H 0.566 A 0.357 H 0.619
186 L S 0.606 A 0.406 H 0.601
187 G R 0.776 S 0.277 S 0.549
188 K R 0.812 A 0.369 H 0.549
189 E R 0.849 K 0.422 H 0.650
190 N R 0.809 S 0.238 S 0.548
191 E R 0.747 A 0.460 H 0.644
192 D R 0.661 A 0.500 H 0.703
193 Y H 0.739 A 0.703 H 0.851
194 D H 0.803 A 0.815 H 0.893
195 K H 0.821 A 0.824 H 0.886
196 L H 0.796 A 0.845 H 0.879
197 V H 0.639 A 0.667 H 0.788
198 G R 0.548 A 0.529 H 0.633
199 N R 0.724 A 0.636 H 0.791
200 N R 0.836 S 0.358 S 0.781
201 K H 0.700 A 0.738 H 0.827
202 D H 0.873 A 0.923 H 0.973
203 E H 0.889 A 0.924 H 0.999
204 T H 0.915 A 0.897 H 0.949
205 K H 0.950 A 0.956 H 0.987
206 K H 0.950 A 0.985 H 1.000
207 E H 0.929 A 1.000 H 1.000
208 I H 0.953 A 0.915 H 1.000
209 L H 0.964 A 0.944 H 0.988
210 E H 0.965 A 0.958 H 0.977
211 E H 0.954 A 0.958 H 0.989
212 Y H 0.943 A 0.917 H 0.989
213 Q H 0.965 A 0.972 H 1.000
214 K H 0.976 A 1.000 H 1.000
215 E H 0.965 A 0.958 H 1.000
216 N H 0.899 A 0.889 H 0.977
217 E H 0.785 A 0.831 H 0.903
218 D H 0.804 A 0.857 H 0.914
219 M H 0.686 A 0.681 H 0.813
220 L H 0.640 A 0.623 H 0.788
221 F H 0.588 A 0.353 H 0.684
222 S H 0.654 A 0.446 H 0.668
223 E R 0.743 A 0.308 H 0.549
224 L R 0.719 S 0.394 S 0.674
225 D R 0.800 S 0.369 S 0.840
226 L R 0.947 R 0.561 S 0.934
227 K R 0.973 R 0.881 S 0.948
228 D H 0.868 A 0.897 H 0.937
229 E H 0.950 A 0.971 H 1.000
230 D H 0.962 A 0.971 H 1.000
231 Y H 0.975 A 0.958 H 1.000
232 K H 0.975 A 1.000 H 1.000
233 K H 0.932 A 0.986 H 1.000
234 S H 0.932 A 0.958 H 1.000
235 F H 0.954 A 0.972 H 1.000
236 D H 0.943 A 0.986 H 1.000
237 S H 0.921 A 0.944 H 1.000
238 F H 0.954 A 0.944 H 0.988
239 T H 0.954 A 0.986 H 1.000
240 L H 0.886 A 0.900 H 0.939
241 V H 0.801 A 0.809 H 0.911
242 Q H 0.727 A 0.708 H 0.801
243 G H 0.629 A 0.625 H 0.744
244 K H 0.658 A 0.831 H 0.907
245 R H 0.553 A 0.468 H 0.652
246 A R 0.575 S 0.431 S 0.774
247 K S 0.563 S 0.600 S 0.787
248 F S 0.714 S 0.729 S 0.902
249 D S 0.774 S 0.696 S 0.913
250 K S 0.827 S 0.725 S 0.863
251 D S 0.748 S 0.600 S 0.779
252 L S 0.673 S 0.529 S 0.767
253 Y H 0.561 A 0.423 H 0.588
254 A H 0.516 A 0.479 H 0.576
255 Q H 0.532 A 0.500 H 0.644
256 F R 0.755 U 0.362 S 0.800
257 D R 0.755 A 0.464 H 0.564
258 D R 0.790 K 0.493 H 0.738
259 Q R 0.537 S 0.348 S 0.613
260 A S 0.725 S 0.529 S 0.853
261 V S 0.861 S 0.714 S 0.902
262 V S 0.907 S 0.914 S 0.951
263 S S 0.891 S 0.721 S 0.911
264 I S 0.882 S 0.841 S 0.987
265 D S 0.759 S 0.629 S 0.976
266 I S 0.611 S 0.471 S 0.816
267 E H 0.555 A 0.412 H 0.772
268 E H 0.583 A 0.463 H 0.768
269 A H 0.541 A 0.523 H 0.774
270 L R 0.629 S 0.348 S 0.791
271 S R 0.611 R 0.455 S 0.739
272 D H 0.647 A 0.738 H 0.827
273 Y H 0.680 A 0.742 H 0.882
274 A H 0.751 A 0.757 H 0.877
275 I H 0.861 A 0.797 H 0.913
276 E H 0.895 A 0.929 H 0.951
277 E H 0.963 A 0.957 H 0.988
278 L H 0.964 A 0.944 H 0.988
279 F H 0.964 A 0.972 H 1.000
280 Y H 0.964 A 0.944 H 1.000
281 E H 0.919 A 0.901 H 1.000
282 Y H 0.830 A 0.563 H 0.903
283 E H 0.807 A 0.871 H 0.926
284 E H 0.788 A 0.847 H 0.917
285 K H 0.744 A 0.778 H 0.893
286 Y H 0.556 K 0.423 H 0.806
287 M R 0.680 A 0.652 H 0.751
288 D R 0.748 K 0.343 H 0.705
289 S R 0.816 S 0.300 S 0.619
290 S H 0.641 A 0.561 H 0.687
291 E H 0.600 A 0.731 H 0.833
292 D H 0.600 A 0.588 H 0.747
293 Y H 0.842 A 0.776 H 0.884
294 E H 0.880 A 0.882 H 0.949
295 G H 0.925 A 0.940 H 0.961
296 A H 0.961 A 0.956 H 1.000
297 E H 0.939 A 0.971 H 0.987
298 K H 0.974 A 1.000 H 1.000
299 Y H 0.918 A 0.914 H 1.000
300 A H 0.918 A 0.971 H 1.000
301 Y H 0.975 A 1.000 H 1.000
302 S H 0.830 A 0.930 H 0.988
303 K H 0.796 A 0.761 H 0.976
304 Y H 0.733 A 0.667 H 0.762
305 K H 0.722 A 0.819 H 0.869
306 E H 0.832 A 0.875 H 0.953
307 I H 0.866 A 0.903 H 0.941
308 L H 0.855 A 0.889 H 0.953
309 E H 0.639 A 0.873 H 0.940
310 K H 0.639 A 0.465 H 0.794
311 S R 0.816 S 0.470 S 0.908
312 K R 0.806 R 0.508 S 0.903
313 L R 0.756 S 0.542 S 0.881
314 K R 0.687 R 0.364 S 0.793
315 G R 0.678 G 0.352 T 0.598
316 E R 0.806 S 0.327 S 0.599
317 S R 0.818 S 0.481 S 0.630
318 E R 0.828 A 0.316 H 0.620
319 D S 0.618 S 0.379 S 0.671
320 L S 0.815 S 0.727 S 0.882
321 L S 0.870 S 0.638 S 0.925
322 L S 0.975 S 0.944 S 1.000
323 Y S 0.954 S 0.736 S 0.989
324 L S 0.943 S 0.746 S 0.952
325 E S 0.919 S 0.817 S 0.976
326 K S 0.729 R 0.521 S 0.916
327 K S 0.583 S 0.507 S 0.713
328 D R 0.931 T 0.577 T 0.685
329 G R 0.952 T 0.843 T 0.914
330 K S 0.714 S 0.667 S 0.963
331 W S 0.921 R 0.500 S 1.000
332 N S 0.863 S 0.873 S 0.964
333 V S 0.804 S 0.671 S 0.939
334 D R 0.736 S 0.687 S 1.000
335 L R 0.649 A 0.687 H 0.838
336 S R 0.760 A 0.587 H 0.794
337 L R 0.726 A 0.387 H 0.693
338 D R 0.756 A 0.387 H 0.666
339 D R 0.735 S 0.333 S 0.603
340 N H 0.703 A 0.734 H 0.811
341 K H 0.812 A 0.859 H 0.986
342 Y H 0.830 A 0.875 H 0.932
343 V H 0.879 A 0.871 H 0.929
344 I H 0.946 A 0.946 H 0.966
345 S H 0.966 A 0.979 H 0.995
346 A H 0.951 A 0.950 H 1.000
347 F H 0.933 A 0.844 H 0.986
348 I H 0.708 A 0.708 H 0.797
349 G R 0.838 G 0.562 T 0.690
350 D R 0.938 T 0.375 T 0.797
351 I R 0.874 G 0.000 T 0.000