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© Nanjiang Shu

SciLifeLab Logotype Stockholm University logotype

Prediction in text file can be found in query.predfrag1d

The sequence file in FASTA format can be found in seq.fa

Sequence and predicted secondary structure and shape strings

Description of the result:
Num Residue index in the sequence
AA One-letter amino acid code
Sec Predicted three state secondary structure, (H, S and R).
ConfSec Confidence of the predicted secondary structure.
S8 Predicted 8 state Shape String, (R, S, U, V, A, K, G and T).
ConfS8 Confidence of the predicted 8 state Shape String.
S3 Predicted 3 state Shape String (R, S, U and V to S; A and K to H; G and T to T).
ConfS3 Confidence of the predicted 3 state Shape String.

No. AA Sec ConfSec S8 ConfS8 S3 ConfS3
1 M R 0.874 A 0.000 H 0.000
2 A R 0.751 A 0.750 H 0.797
3 Q H 0.589 A 0.900 H 0.926
4 T H 0.791 A 0.923 H 1.000
5 S H 0.658 A 0.647 H 0.759
6 T H 0.653 A 0.722 H 0.821
7 I H 0.650 A 0.619 H 0.685
8 Q H 0.662 A 0.625 H 0.690
9 N H 0.624 A 0.690 H 0.775
10 D R 0.599 A 0.576 H 0.674
11 T H 0.827 A 0.853 H 0.937
12 K H 0.872 A 0.857 H 0.890
13 A H 0.850 A 0.882 H 0.937
14 A H 0.965 A 1.000 H 1.000
15 E H 0.949 A 0.946 H 0.989
16 E H 0.936 A 0.927 H 0.991
17 Y H 0.958 A 0.977 H 1.000
18 A H 0.961 A 1.000 H 1.000
19 A H 0.981 A 1.000 H 1.000
20 R H 0.918 A 0.937 H 1.000
21 V H 0.936 A 0.960 H 0.995
22 F H 0.971 A 0.981 H 1.000
23 E H 0.987 A 1.000 H 1.000
24 T H 0.987 A 1.000 H 1.000
25 I H 0.945 A 0.964 H 0.997
26 K H 0.958 A 0.981 H 0.997
27 Q H 0.943 A 0.963 H 0.981
28 R H 0.869 A 0.815 H 0.981
29 N R 0.958 U 0.500 S 0.662
30 P R 0.972 A 0.833 H 0.869
31 G R 0.972 K 0.623 H 0.834
32 E R 0.899 U 0.407 S 0.853
33 T H 0.796 A 0.833 H 0.901
34 E H 0.866 A 0.868 H 0.931
35 F H 0.899 A 0.926 H 0.949
36 H H 0.928 A 0.907 H 0.981
37 Q H 0.958 A 0.963 H 0.981
38 A H 0.972 A 0.981 H 0.997
39 V H 0.987 A 1.000 H 1.000
40 E H 0.972 A 0.981 H 1.000
41 E H 0.971 A 0.981 H 0.996
42 F H 0.971 A 1.000 H 1.000
43 L H 0.956 A 0.981 H 0.996
44 N H 0.896 A 0.962 H 1.000
45 S H 0.611 A 0.906 H 0.931
46 V H 0.671 A 0.453 H 0.915
47 I H 0.851 A 0.868 H 0.899
48 P H 0.791 A 0.811 H 0.850
49 A H 0.896 A 0.906 H 0.931
50 L H 0.884 A 0.870 H 0.901
51 A H 0.869 A 0.870 H 0.917
52 K H 0.582 A 0.873 H 0.934
53 E R 0.959 U 0.727 S 0.950
54 P H 0.800 A 0.945 H 0.966
55 K H 0.858 A 0.909 H 0.981
56 Y H 0.916 A 0.855 H 0.934
57 E H 0.887 A 0.889 H 0.949
58 A H 0.869 A 0.944 H 0.997
59 N R 0.884 K 0.685 H 0.965
60 G R 0.887 T 0.800 T 0.856
61 I H 0.713 A 0.909 H 0.981
62 L H 0.785 A 0.745 H 0.793
63 E H 0.829 A 0.800 H 0.840
64 Q H 0.829 A 0.800 H 0.840
65 L H 0.814 A 0.818 H 0.872
66 T R 0.582 K 0.382 H 0.793
67 E R 0.698 S 0.519 S 0.773
68 P R 0.731 R 0.491 S 0.639
69 E R 0.741 A 0.800 H 0.944
70 R S 0.650 S 0.615 S 0.731
71 L S 0.833 S 0.712 S 0.930
72 I S 0.969 S 0.843 S 0.945
73 S S 0.938 S 0.843 S 0.962
74 F S 0.923 S 0.863 S 0.979
75 R S 0.954 R 0.569 S 0.962
76 V S 0.938 S 0.941 S 0.996
77 P S 0.802 R 0.827 S 0.979
78 W S 0.791 S 0.679 S 0.964
79 V S 0.810 S 0.926 S 0.981
80 D R 0.914 R 0.519 S 0.997
81 D R 0.971 A 0.887 H 0.964
82 S R 0.955 K 0.769 H 0.913
83 G R 0.907 T 0.863 T 0.979
84 A R 0.818 R 0.745 S 0.962
85 V S 0.848 R 0.596 S 0.996
86 N S 0.818 S 0.750 S 0.979
87 V S 0.818 S 0.769 S 0.864
88 N S 0.695 S 0.615 S 0.797
89 R R 0.619 S 0.500 S 0.665
90 G S 0.641 S 0.453 S 0.590
91 Y S 0.766 S 0.759 S 0.965
92 R S 0.810 S 0.704 S 0.885
93 V S 0.861 S 0.768 S 0.982
94 Q S 0.849 S 0.375 S 0.905
95 F S 0.797 S 0.569 S 0.656
96 N S 0.720 S 0.678 S 0.794
97 S R 0.782 K 0.500 H 0.754
98 A R 0.790 A 0.790 H 0.860
99 I R 0.853 K 0.541 H 0.900
100 G R 0.906 S 0.619 S 0.753
101 P R 0.846 R 0.781 S 0.905
102 Y S 0.812 R 0.609 S 0.838
103 K S 0.837 S 0.815 S 0.880
104 G S 0.821 S 0.762 S 0.862
105 G S 0.839 R 0.651 S 0.862
106 L S 0.851 S 0.818 S 0.869
107 R S 0.800 S 0.692 S 0.787
108 F S 0.784 S 0.714 S 0.944
109 H R 0.768 S 0.823 S 0.999
110 P R 0.853 A 0.597 H 0.679
111 S R 0.866 A 0.627 H 0.721
112 V R 0.774 R 0.431 S 0.671
113 T R 0.715 S 0.552 S 0.701
114 G H 0.779 A 0.786 H 0.843
115 S H 0.821 A 0.821 H 0.905
116 I H 0.800 A 0.836 H 0.887
117 V H 0.814 A 0.800 H 0.840
118 K H 0.785 A 0.836 H 0.872
119 F H 0.793 A 0.789 H 0.862
120 L H 0.701 A 0.810 H 0.923
121 G H 0.598 A 0.508 H 0.590
122 F H 0.690 A 0.683 H 0.769
123 E H 0.747 A 0.738 H 0.815
124 Q H 0.793 A 0.762 H 0.808
125 I H 0.809 A 0.797 H 0.891
126 F H 0.812 A 0.785 H 0.854
127 K H 0.827 A 0.833 H 0.882
128 N H 0.827 A 0.788 H 0.856
129 S H 0.861 A 0.923 H 0.959
130 L H 0.800 A 0.828 H 0.932
131 T R 0.910 A 0.452 H 0.901
132 G R 0.898 T 0.800 T 0.880
133 L R 0.885 R 0.500 S 0.986
134 P R 0.920 V 0.609 S 1.000
135 I R 0.881 S 0.778 S 0.944
136 G R 0.637 R 0.683 S 0.794
137 G S 0.793 S 0.651 S 0.739
138 G S 0.772 S 0.687 S 0.838
139 K S 0.756 S 0.714 S 0.808
140 G S 0.726 S 0.613 S 0.735
141 G S 0.708 S 0.590 S 0.660
142 S S 0.756 S 0.650 S 0.754
143 D R 0.625 K 0.373 H 0.648
144 F R 0.788 R 0.492 S 0.823
145 D R 0.880 S 0.632 S 0.846
146 P R 0.891 A 0.750 H 0.813
147 K R 0.946 R 0.554 S 0.628
148 G R 0.988 T 0.800 T 0.872
149 K R 0.919 R 0.737 S 0.892
150 S R 0.907 R 0.828 S 0.968
151 D H 0.869 A 0.881 H 0.969
152 A H 0.900 A 0.900 H 0.941
153 E H 0.928 A 0.934 H 0.970
154 V H 0.906 A 0.905 H 0.931
155 M H 0.896 A 0.906 H 0.932
156 R H 0.898 A 0.892 H 0.920
157 F H 0.911 A 0.909 H 0.934
158 C H 0.935 A 0.939 H 0.960
159 Q H 0.923 A 0.939 H 0.960
160 S H 0.922 A 0.923 H 0.946
161 F H 0.920 A 0.891 H 0.959
162 M H 0.933 A 0.906 H 0.959
163 T H 0.933 A 0.953 H 0.972
164 E H 0.957 A 1.000 H 1.000
165 L H 0.970 A 0.984 H 1.000
166 Q H 0.942 A 0.952 H 0.985
167 K H 0.926 A 0.917 H 0.969
168 H H 0.715 A 0.500 H 0.909
169 I H 0.652 A 0.500 H 0.612
170 G R 0.842 G 0.431 T 0.597
171 P R 0.866 A 0.655 H 0.790
172 D R 0.818 K 0.571 H 0.751
173 T R 0.835 A 0.561 H 0.665
174 D S 0.779 S 0.614 S 0.877
175 V S 0.842 S 0.831 S 0.983
176 P S 0.703 R 0.883 S 0.984
177 A S 0.683 S 0.541 S 0.928
178 G R 0.739 R 0.524 S 0.685
179 D R 0.784 S 0.672 S 0.945
180 I R 0.727 R 0.600 S 0.907
181 G R 0.779 T 0.631 T 0.748
182 V R 0.764 S 0.815 S 0.907
183 G R 0.781 S 0.387 S 0.804
184 G H 0.831 A 0.790 H 0.860
185 R H 0.856 A 0.825 H 0.917
186 E H 0.812 A 0.885 H 0.928
187 I H 0.808 A 0.800 H 0.840
188 G H 0.733 A 0.661 H 0.721
189 Y H 0.756 A 0.741 H 0.790
190 L H 0.779 A 0.719 H 0.801
191 F H 0.698 A 0.655 H 0.809
192 G H 0.626 A 0.545 H 0.653
193 Q H 0.669 A 0.673 H 0.778
194 Y H 0.742 A 0.736 H 0.834
195 K H 0.821 A 0.792 H 0.834
196 R H 0.771 A 0.904 H 0.946
197 L H 0.781 A 0.778 H 0.837
198 R H 0.751 A 0.820 H 0.875
199 G R 0.674 T 0.440 T 0.548
200 A H 0.596 A 0.451 H 0.557
201 Y H 0.611 A 0.765 H 0.894
202 D R 0.656 A 0.434 H 0.574
203 A H 0.611 A 0.545 H 0.778
204 G R 0.563 K 0.333 H 0.635
205 T H 0.557 A 0.593 H 0.692
206 L R 0.708 S 0.689 S 0.829
207 T R 0.756 S 0.500 S 0.860
208 G R 0.896 T 0.781 T 0.838
209 K R 0.922 R 0.692 S 0.814
210 G R 0.875 R 0.591 S 0.765
211 L H 0.683 A 0.682 H 0.739
212 S H 0.683 A 0.692 H 0.774
213 Y H 0.703 K 0.677 H 0.827
214 G R 0.873 T 0.677 T 0.761
215 G R 0.800 R 0.631 S 0.761
216 S R 0.788 R 0.391 S 0.596
217 L R 0.751 R 0.344 S 0.542
218 A R 0.727 R 0.375 S 0.542
219 R R 0.755 A 0.815 H 0.880
220 T H 0.611 A 0.892 H 0.920
221 E H 0.624 A 0.862 H 0.907
222 A H 0.863 A 0.891 H 0.918
223 T H 0.815 A 0.828 H 0.905
224 G H 0.784 A 0.750 H 0.865
225 Y H 0.767 A 0.758 H 0.856
226 G H 0.755 A 0.746 H 0.808
227 L H 0.800 A 0.800 H 0.840
228 V H 0.788 A 0.754 H 0.801
229 Y H 0.784 A 0.781 H 0.838
230 F H 0.756 A 0.758 H 0.804
231 T H 0.773 A 0.754 H 0.829
232 V H 0.848 A 0.850 H 0.898
233 E H 0.923 A 0.966 H 0.983
234 M H 0.961 A 0.982 H 0.997
235 L H 0.989 A 1.000 H 1.000
236 E H 0.988 A 0.982 H 1.000
237 A H 0.916 A 0.982 H 0.997
238 A R 0.858 K 0.727 H 0.950
239 G R 0.975 T 0.875 T 0.936
240 E R 0.921 S 0.596 S 0.892
241 T R 0.842 S 0.603 S 0.938
242 I R 0.795 K 0.583 H 0.869
243 R R 0.915 R 0.852 S 0.928
244 G R 0.931 T 0.921 T 0.944
245 K R 0.933 R 0.859 S 0.999
246 K S 0.958 S 0.723 S 1.000
247 I S 1.000 S 1.000 S 1.000
248 V S 1.000 S 0.692 S 1.000
249 V S 1.000 S 0.970 S 0.986
250 S S 0.718 S 0.540 S 0.985
251 G R 0.958 G 0.859 T 0.932
252 S R 0.970 K 0.508 H 0.712
253 G R 0.945 R 0.703 S 0.757
254 N H 0.781 A 0.810 H 0.849
255 V H 0.782 A 0.750 H 0.797
256 A H 0.797 A 0.759 H 0.805
257 I H 0.785 A 0.745 H 0.793
258 Y H 0.810 A 0.815 H 0.853
259 A H 0.869 A 0.852 H 0.885
260 I H 0.866 A 0.849 H 0.883
261 E H 0.926 A 0.925 H 0.948
262 K H 0.971 A 0.981 H 0.996
263 A H 0.943 A 0.963 H 0.997
264 H H 0.975 A 0.965 H 1.000
265 E H 0.991 A 1.000 H 1.000
266 L H 0.631 A 0.607 H 1.000
267 G R 0.981 T 0.984 T 1.000
268 A R 0.970 R 0.667 S 1.000
269 K S 0.934 R 0.500 S 0.945
270 V S 1.000 S 0.631 S 1.000
271 I S 1.000 S 0.585 S 0.682
272 V S 1.000 S 0.909 S 0.999
273 C S 0.983 S 0.831 S 0.973
274 S S 0.599 S 0.677 S 0.814
275 D R 0.680 A 0.476 H 0.657
276 S R 0.944 A 0.597 H 0.721
277 A R 0.786 A 0.607 H 0.843
278 G S 0.598 S 0.475 S 0.590
279 F S 0.687 S 0.621 S 0.894
280 V S 0.849 S 0.807 S 0.937
281 Y S 0.818 S 0.696 S 0.920
282 D R 0.761 U 0.345 S 0.934
283 K R 0.737 A 0.926 H 0.949
284 E R 0.881 A 0.491 H 0.980
285 G R 0.818 T 0.462 T 0.897
286 I R 0.720 R 0.392 S 0.945
287 K R 0.676 R 0.510 S 0.767
288 V H 0.620 A 0.729 H 0.815
289 E H 0.763 A 0.851 H 0.903
290 T H 0.826 A 0.848 H 0.919
291 V H 0.874 A 0.867 H 0.898
292 K H 0.944 A 0.956 H 0.974
293 Q H 0.963 A 0.978 H 1.000
294 L H 0.929 A 0.957 H 0.975
295 K H 0.911 A 0.957 H 0.975
296 E H 0.860 A 0.957 H 0.994
297 V H 0.796 A 0.830 H 0.884
298 E H 0.653 A 0.630 H 0.713
299 R H 0.603 A 0.787 H 0.884
300 K H 0.572 A 0.480 H 0.565
301 R H 0.543 A 0.462 H 0.615
302 I H 0.596 A 0.725 H 0.793
303 S H 0.783 A 0.882 H 0.945
304 E H 0.876 A 0.902 H 0.928
305 Y H 0.907 A 0.941 H 0.962
306 V H 0.934 A 0.959 H 0.977
307 I H 0.883 A 0.979 H 1.000
308 I H 0.813 A 0.723 H 0.939
309 H R 0.779 U 0.532 S 0.811
310 P R 0.763 A 0.766 H 0.811
311 S R 0.784 K 0.437 H 0.726
312 A R 0.692 R 0.429 S 0.802
313 E S 0.699 R 0.400 S 0.806
314 Y S 0.767 S 0.647 S 0.911
315 Y S 0.695 S 0.308 S 0.880
316 A R 0.656 R 0.642 S 0.769
317 G R 0.901 T 0.709 T 0.778
318 G R 0.861 S 0.518 S 0.721
319 D R 0.723 R 0.474 S 0.726
320 V H 0.598 K 0.368 H 0.620
321 W H 0.618 A 0.393 H 0.674
322 S H 0.643 A 0.339 H 0.679
323 V R 0.760 R 0.687 S 0.972
324 P R 0.910 R 0.862 S 0.946
325 C R 0.875 S 0.682 S 0.830
326 D R 0.875 A 0.803 H 0.869
327 I S 0.875 S 0.848 S 0.895
328 A S 0.911 S 0.818 S 0.882
329 L S 0.863 U 0.652 S 0.947
330 P S 0.581 R 0.833 S 0.895
331 C R 0.899 K 0.621 H 0.778
332 A R 0.935 S 0.667 S 0.960
333 T R 0.933 R 0.508 S 0.931
334 Q R 0.797 R 0.635 S 0.712
335 N R 0.781 T 0.635 T 0.712
336 E R 0.747 A 0.812 H 0.918
337 I R 0.784 R 0.365 S 0.849
338 N R 0.856 S 0.435 S 0.874
339 A H 0.930 A 0.968 H 0.985
340 D H 0.926 A 0.983 H 1.000
341 Q H 0.963 A 0.966 H 0.998
342 A H 0.991 A 1.000 H 1.000
343 R H 0.976 A 0.983 H 0.998
344 A H 0.975 A 0.911 H 0.997
345 L H 0.945 A 0.964 H 0.981
346 V H 0.972 A 0.981 H 0.997
347 K H 0.899 A 0.963 H 0.997
348 N R 0.899 K 0.500 H 0.917
349 G R 0.905 T 0.857 T 0.905
350 V R 0.839 R 0.589 S 0.951
351 I S 0.742 S 0.724 S 0.820
352 A S 0.842 S 0.695 S 0.867
353 V S 0.835 S 0.783 S 0.855
354 A S 0.624 S 0.683 S 0.808
355 E R 0.831 R 0.355 S 0.735
356 G R 0.908 A 0.687 H 0.744
357 A R 0.910 R 0.723 S 0.840
358 N R 0.910 R 0.708 S 0.827
359 M R 0.883 T 0.578 T 0.650
360 P R 0.894 A 0.635 H 0.712
361 S R 0.841 S 0.407 S 0.779
362 T R 0.877 R 0.439 S 0.771
363 L H 0.796 A 0.759 H 0.805
364 E H 0.943 A 0.944 H 0.965
365 A H 0.986 A 1.000 H 1.000
366 V H 0.967 A 0.980 H 0.995
367 D H 0.966 A 1.000 H 1.000
368 I H 0.933 A 0.958 H 0.977
369 Y H 0.886 A 0.878 H 0.942
370 H H 0.841 A 0.900 H 0.926
371 E H 0.741 A 0.788 H 0.897
372 N R 0.832 K 0.509 H 0.903
373 K R 0.894 T 0.596 T 0.741
374 V R 0.756 R 0.550 S 0.912
375 L S 0.919 S 0.468 S 0.874
376 F S 0.879 S 0.871 S 0.985
377 G R 0.644 S 0.508 S 0.914
378 P R 0.806 R 0.857 S 0.931
379 A H 0.831 A 0.839 H 0.874
380 K H 0.853 A 0.871 H 0.901
381 A H 0.879 A 0.855 H 0.901
382 A H 0.881 A 0.887 H 0.915
383 N R 0.735 K 0.609 H 0.959
384 A R 0.731 A 0.937 H 0.999
385 G H 0.768 A 0.667 H 0.876
386 G H 0.781 A 0.698 H 0.767
387 V H 0.825 A 0.803 H 0.857
388 A H 0.848 A 0.900 H 0.969
389 V H 0.852 A 0.828 H 0.879
390 S H 0.877 A 0.947 H 0.967
391 A H 0.872 A 0.855 H 0.903
392 L H 0.863 A 0.846 H 0.880
393 E H 0.845 A 0.843 H 0.877
394 M H 0.857 A 0.840 H 0.926
395 A H 0.757 A 0.714 H 0.802
396 Q H 0.714 A 0.812 H 0.851
397 N H 0.635 A 0.653 H 0.854
398 S H 0.611 A 0.558 H 0.648
399 T H 0.647 A 0.600 H 0.700
400 R R 0.633 A 0.345 H 0.481
401 M R 0.687 S 0.649 S 0.756
402 S R 0.690 S 0.576 S 0.750
403 W R 0.731 R 0.587 S 0.931
404 T R 0.747 R 0.766 S 0.959
405 F H 0.885 A 0.877 H 0.907
406 Q H 0.947 A 0.955 H 0.973
407 T H 0.971 A 0.924 H 0.999
408 V H 0.911 A 0.909 H 0.934
409 D H 0.935 A 0.939 H 0.960
410 E H 0.983 A 1.000 H 1.000
411 H H 0.983 A 1.000 H 1.000
412 L H 0.982 A 1.000 H 1.000
413 Q H 0.981 A 1.000 H 1.000
414 N H 0.825 A 0.984 H 0.998
415 I H 0.940 A 0.950 H 0.969
416 M H 0.923 A 0.932 H 0.969
417 K H 0.935 A 0.931 H 0.953
418 D H 0.905 A 0.895 H 0.937
419 I H 0.887 A 0.945 H 0.966
420 H H 0.843 A 0.800 H 0.872
421 K H 0.843 A 0.925 H 0.964
422 N H 0.806 A 0.755 H 0.883
423 S H 0.881 A 0.925 H 0.948
424 S H 0.926 A 0.962 H 0.996
425 N H 0.941 A 0.943 H 0.996
426 A H 0.986 A 1.000 H 1.000
427 A H 0.958 A 0.981 H 0.997
428 S H 0.959 A 1.000 H 1.000
429 E H 0.945 A 0.964 H 0.981
430 Y R 0.669 K 0.745 H 0.934
431 G R 0.943 T 0.722 T 0.869
432 A R 0.941 A 0.340 H 0.655
433 S R 0.881 K 0.415 H 0.542
434 G R 0.851 T 0.321 T 0.493
435 N R 0.731 R 0.434 S 0.769
436 L S 0.611 S 0.434 S 0.639
437 V S 0.671 S 0.547 S 0.704
438 I S 0.641 S 0.491 S 0.688
439 G R 0.506 G 0.415 T 0.509
440 S R 0.545 U 0.481 S 0.598
441 N R 0.582 R 0.509 S 0.606
442 I H 0.814 A 0.836 H 0.872
443 A H 0.863 A 0.842 H 0.937
444 G H 0.852 A 0.828 H 0.864
445 F H 0.869 A 0.864 H 0.896
446 L H 0.896 A 0.881 H 0.910
447 K H 0.876 A 0.898 H 0.925
448 V H 0.906 A 0.937 H 0.971
449 A H 0.945 A 0.969 H 0.986
450 D H 0.963 A 0.983 H 0.998
451 T H 0.736 A 0.686 H 0.996
452 M H 0.739 A 1.000 H 1.000
453 I H 0.969 A 0.962 H 0.979
454 A H 0.991 A 1.000 H 1.000
455 Q H 0.686 A 0.667 H 1.000
456 G R 0.987 T 0.600 T 1.000
457 I R 0.975 R 0.600 S 1.000
458 I R 0.874 G 0.000 T 0.000