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© Nanjiang Shu

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Results

  • Submitted: 2021-03-10 09:12:07 CET
  • Status: Finished
  • Waiting time: 1 sec
  • Running Time: 21 mins
 Results of your prediction with jobid: example_1seq (jobname: example 1seq)

Zipped folder of your result can be found in example_1seq.zip

Dumped prediction in one text file can be found in query.frag1d.txt

The sequence(s) you submitted can be found in query.raw.fa

Sequence and predicted secondary structure and shape strings

Description of the result:
Num Residue index in the sequence
AA One-letter amino acid code
Sec Predicted three state secondary structure, (H, S and R).
ConfSec Confidence of the predicted secondary structure.
S8 Predicted 8 state Shape String, (R, S, U, V, A, K, G and T).
ConfS8 Confidence of the predicted 8 state Shape String.
S3 Predicted 3 state Shape String (R, S, U and V to S; A and K to H; G and T to T).
ConfS3 Confidence of the predicted 3 state Shape String.

No. AA Sec ConfSec S8 ConfS8 S3 ConfS3
1 G R 0.874 T 0.667 T 0.726
2 S R 0.807 R 0.400 S 0.840
3 H R 0.849 S 0.500 S 0.797
4 M R 0.666 S 0.789 S 0.967
5 Q R 0.611 R 0.483 S 0.953
6 A R 0.567 R 0.472 S 0.917
7 E S 0.802 R 0.476 S 0.787
8 I S 0.801 S 0.646 S 0.744
9 L S 0.872 S 0.745 S 0.950
10 L S 0.975 S 0.860 S 0.982
11 T S 0.949 S 0.772 S 0.982
12 L S 0.961 S 0.930 S 0.952
13 K S 0.863 S 0.649 S 0.922
14 L S 0.797 S 0.661 S 0.859
15 Q R 0.858 T 0.585 T 0.753
16 Q R 0.869 T 0.556 T 0.678
17 K S 0.676 S 0.571 S 0.736
18 L S 0.761 R 0.446 S 0.767
19 F S 0.718 A 0.482 H 0.644
20 A S 0.639 S 0.544 S 0.711
21 D R 0.953 S 0.750 S 0.912
22 P H 0.850 A 0.934 H 0.956
23 R H 0.879 A 0.871 H 0.957
24 R H 0.919 A 0.921 H 0.958
25 I H 0.957 A 0.953 H 0.986
26 S H 0.970 A 0.984 H 0.999
27 L H 0.970 A 0.984 H 0.999
28 L H 0.982 A 1.000 H 1.000
29 K H 0.982 A 1.000 H 1.000
30 H H 0.920 A 0.969 H 0.986
31 I H 0.896 A 0.922 H 0.972
32 A H 0.908 A 0.922 H 0.945
33 L H 0.894 A 0.952 H 0.985
34 S H 0.876 A 0.820 H 0.970
35 G R 0.966 T 0.817 T 0.941
36 S R 0.900 S 0.800 S 0.926
37 I H 0.782 A 0.817 H 0.855
38 S H 0.821 A 0.817 H 0.855
39 Q H 0.913 A 0.917 H 0.984
40 G H 0.953 A 0.967 H 0.984
41 A H 0.977 A 0.983 H 0.998
42 K H 0.979 A 1.000 H 1.000
43 D H 0.980 A 1.000 H 1.000
44 A R 0.630 K 0.873 H 1.000
45 G R 0.919 T 0.905 T 0.931
46 I R 0.931 S 0.683 S 0.931
47 S R 0.856 R 0.841 S 0.903
48 Y H 0.894 A 0.952 H 0.971
49 K H 0.931 A 0.984 H 0.999
50 S H 0.933 A 0.953 H 0.999
51 A H 0.970 A 0.984 H 0.999
52 W H 0.982 A 0.984 H 1.000
53 D H 0.982 A 1.000 H 1.000
54 A H 0.969 A 0.984 H 0.999
55 I H 0.956 A 1.000 H 1.000
56 N H 0.930 A 0.984 H 1.000
57 E H 0.930 A 0.935 H 0.971
58 M H 0.942 A 0.984 H 0.999
59 N H 0.879 A 0.661 H 0.943
60 Q H 0.917 A 0.629 H 0.985
61 L H 0.879 A 0.806 H 0.971
62 S H 0.624 A 0.597 H 0.666
63 E R 0.906 A 0.492 H 0.630
64 H R 0.831 S 0.730 S 0.890
65 I R 0.772 S 0.516 S 0.905
66 L R 0.673 A 0.828 H 0.865
67 V S 0.821 S 0.719 S 0.784
68 E S 0.797 S 0.687 S 0.757
69 R S 0.747 R 0.656 S 0.757
70 A R 0.781 R 0.371 S 0.790
71 T R 0.815 A 0.280 H 0.634
72 G R 0.900 G 0.348 T 0.638
73 G R 0.955 R 0.524 S 0.603
74 K R 0.821 R 0.455 S 0.621
75 G R 0.812 G 0.318 T 0.582
76 G R 0.849 T 0.409 T 0.661
77 G R 0.726 S 0.571 S 0.644
78 G R 0.515 G 0.350 T 0.496
79 A S 0.874 S 0.441 S 0.881
80 V S 0.937 S 0.864 S 0.910
81 L S 0.904 R 0.823 S 0.915
82 T R 0.930 R 0.855 S 0.985
83 R H 0.866 A 0.919 H 0.985
84 Y H 0.891 A 0.918 H 0.998
85 G H 0.955 A 0.968 H 0.985
86 Q H 0.969 A 1.000 H 1.000
87 R H 0.981 A 1.000 H 1.000
88 L H 0.982 A 1.000 H 1.000
89 I H 0.982 A 1.000 H 1.000
90 Q H 0.982 A 1.000 H 1.000
91 L H 0.970 A 0.984 H 1.000
92 Y H 0.982 A 1.000 H 1.000
93 D H 0.969 A 1.000 H 1.000
94 L H 0.980 A 1.000 H 1.000
95 L H 0.966 A 0.983 H 0.998
96 A H 0.964 A 0.983 H 0.998
97 Q H 0.990 A 1.000 H 1.000
98 I H 0.975 A 0.982 H 0.997
99 Q H 0.960 A 0.946 H 0.997
100 Q H 0.973 A 0.982 H 0.997
101 K H 0.987 A 1.000 H 1.000
102 A H 0.986 A 0.962 H 1.000
103 F H 0.986 A 0.981 H 1.000
104 D H 0.985 A 1.000 H 1.000
105 V H 0.982 A 0.958 H 1.000
106 L H 0.860 A 0.891 H 0.919
107 S H 0.716 A 0.733 H 0.898
108 D R 0.631 A 0.548 H 0.787
109 D R 0.841 S 0.381 S 0.664
110 D R 0.836 A 0.366 H 0.509
111 A R 0.860 A 0.341 H 0.698
112 L R 0.917 R 0.439 S 0.803
113 P R 0.914 R 0.707 S 0.866
114 L H 0.745 A 0.878 H 0.949
115 N H 0.845 A 0.814 H 0.932
116 S H 0.882 A 0.860 H 0.912
117 L H 0.995 A 0.977 H 1.000
118 L H 0.958 A 0.955 H 1.000
119 A H 0.940 A 0.977 H 0.993
120 A H 0.944 A 0.978 H 0.993
121 I H 0.944 A 0.956 H 0.993
122 S H 0.813 A 0.894 H 0.939
123 R H 0.653 A 0.646 H 0.923
124 F H 0.635 K 0.360 H 0.754
125 S R 0.658 A 0.529 H 0.675
126 L S 0.558 R 0.520 S 0.703
127 Q S 0.581 S 0.521 S 0.636
128 T S 0.563 S 0.679 S 0.813
129 S R 0.850 K 0.433 H 0.812
130 A R 0.772 R 0.687 S 0.811
131 R R 0.779 A 0.562 H 0.918
132 N S 0.693 S 0.779 S 0.873
133 Q S 0.882 S 0.500 S 0.861
134 W S 0.897 S 0.789 S 0.903
135 F S 0.919 R 0.803 S 0.952
136 G S 0.954 S 0.889 S 0.917
137 T S 0.987 S 0.875 S 0.977
138 I S 0.987 R 0.931 S 1.000
139 T S 0.777 S 0.394 S 0.722
140 A S 0.766 R 0.653 S 0.965
141 R R 0.777 R 0.681 S 0.965
142 D R 0.722 K 0.625 H 0.714
143 H R 0.689 S 0.556 S 0.917
144 D R 0.965 A 0.500 H 0.630
145 D R 0.932 R 0.597 S 0.678
146 V R 0.932 R 0.296 S 0.613
147 Q R 0.667 S 0.847 S 0.977
148 Q R 0.656 V 0.514 S 0.881
149 H S 0.965 S 0.597 S 0.965
150 V S 0.998 S 0.958 S 1.000
151 D S 1.000 S 0.904 S 1.000
152 V S 1.000 S 0.944 S 1.000
153 L S 1.000 S 0.507 S 1.000
154 L S 0.786 R 0.588 S 0.962
155 A R 0.911 A 0.615 H 0.695
156 D R 0.934 A 0.349 H 0.685
157 G R 0.883 T 0.797 T 0.891
158 K R 0.883 A 0.403 H 0.596
159 T R 0.693 S 0.556 S 0.971
160 R S 0.957 R 0.524 S 0.985
161 L S 0.983 S 0.892 S 0.959
162 K S 0.972 S 0.866 S 0.910
163 V S 0.974 S 0.913 S 0.950
164 A S 0.975 S 0.643 S 0.951
165 I S 0.740 S 0.903 S 0.953
166 T R 0.639 R 0.847 S 0.917
167 A H 0.908 A 0.944 H 0.964
168 Q H 0.929 A 0.943 H 0.988
169 S H 0.939 A 0.928 H 0.963
170 G H 0.949 A 0.836 H 0.974
171 A H 0.887 A 0.970 H 0.986
172 R H 0.922 A 0.985 H 1.000
173 L H 0.605 A 0.877 H 0.986
174 G R 0.958 T 0.908 T 0.933
175 L R 0.959 S 0.375 S 0.999
176 D R 0.984 R 0.537 S 0.987
177 E R 0.985 R 0.971 S 1.000
178 G R 0.975 T 0.986 T 1.000
179 K R 0.964 R 0.718 S 0.988
180 E S 0.987 R 0.875 S 0.965
181 V S 0.966 S 0.918 S 0.942
182 L S 0.955 S 0.904 S 0.930
183 I S 0.933 S 0.521 S 0.930
184 L S 0.911 S 0.808 S 0.895
185 L S 0.704 S 0.822 S 0.871
186 K R 0.835 R 0.795 S 0.906
187 A H 0.863 A 0.831 H 0.891
188 P H 0.790 A 0.696 H 0.950
189 W H 0.759 K 0.448 H 0.807
190 V R 0.666 S 0.785 S 0.973
191 G S 0.969 R 0.476 S 0.944
192 I S 0.926 S 0.717 S 0.926
193 T S 0.770 S 0.690 S 0.909
194 Q R 0.732 K 0.370 H 0.678
195 D R 0.926 S 0.585 S 0.801
196 E H 0.640 A 0.648 H 0.805
197 A H 0.619 A 0.696 H 0.767
198 V H 0.661 A 0.589 H 0.705
199 A H 0.639 A 0.589 H 0.690
200 Q H 0.605 A 0.590 H 0.660
201 N R 0.821 K 0.437 H 0.891
202 A R 0.803 R 0.697 S 0.778
203 D R 0.859 A 0.657 H 0.935
204 N S 0.673 S 0.792 S 0.857
205 Q S 0.901 S 0.514 S 0.833
206 L S 0.933 S 0.849 S 0.965
207 P S 0.933 R 0.806 S 0.965
208 G S 0.943 S 0.847 S 0.881
209 I S 0.964 S 0.859 S 0.988
210 I S 0.964 R 0.958 S 0.988
211 S S 0.807 A 0.471 H 0.804
212 H S 0.804 S 0.743 S 0.976
213 I S 0.827 S 0.757 S 1.000
214 E S 0.748 S 0.629 S 0.828
215 R S 0.744 S 0.536 S 0.963
216 G R 0.985 R 0.580 S 0.688
217 A R 0.986 A 0.557 H 0.631
218 E R 0.964 A 0.300 H 0.607
219 Q S 0.695 S 0.857 S 0.976
220 C S 0.725 S 0.623 S 0.950
221 E S 0.964 R 0.614 S 0.976
222 V S 0.988 S 0.959 S 0.989
223 L S 1.000 S 0.917 S 1.000
224 M S 0.998 S 0.958 S 0.976
225 A S 1.000 R 0.629 S 0.988
226 L S 0.798 R 0.559 S 1.000
227 P R 0.984 A 0.582 H 0.666
228 D R 0.983 K 0.446 H 0.668
229 G R 0.946 T 0.831 T 0.933
230 Q R 0.800 R 0.723 S 0.840
231 T S 0.885 S 0.723 S 0.867
232 L S 0.899 S 0.788 S 0.856
233 C S 0.913 S 0.791 S 0.858
234 A S 0.905 S 0.812 S 0.888
235 T S 0.905 S 0.681 S 0.888
236 V S 0.748 S 0.900 S 0.939
237 P S 0.709 R 0.826 S 0.963
238 V H 0.880 A 0.897 H 0.949
239 N H 0.901 A 0.925 H 0.974
240 E H 0.947 A 0.939 H 0.973
241 A H 0.958 A 0.672 H 0.986
242 T H 0.666 A 0.923 H 1.000
243 S R 0.784 A 0.578 H 0.650
244 L R 0.849 R 0.523 S 0.840
245 Q R 0.899 S 0.631 S 0.920
246 Q R 0.950 R 0.926 S 0.949
247 G R 0.986 T 0.971 T 0.988
248 Q R 0.975 R 0.657 S 1.000
249 N S 0.976 R 0.972 S 1.000
250 V S 1.000 S 0.959 S 0.989
251 T S 0.999 S 0.959 S 0.977
252 A S 0.977 S 0.493 S 0.965
253 Y S 0.944 S 0.877 S 0.930
254 F S 0.733 S 0.903 S 0.965
255 N R 0.850 R 0.786 S 0.939
256 A H 0.763 A 0.779 H 0.823
257 D H 0.769 K 0.678 H 0.998
258 S H 0.757 A 0.373 H 0.776
259 V S 0.703 S 0.651 S 0.972
260 I S 1.000 S 0.743 S 1.000
261 I S 1.000 R 0.500 S 1.000
262 A S 0.821 S 0.737 S 1.000
263 T S 0.708 S 0.667 S 0.797
264 L R 0.639 S 0.667 S 0.726
265 C R 0.874 G 0.000 T 0.000