# One-dimensional structure prediction by Frag1D version 1.4, 2011-10-19 (c) Shu. # Reference: # Tuping Zhou*, Nanjiang Shu* and Sven Hovmoller. A Novel Method for # Accurate One-dimensional Protein Structure Prediction based on Fragment # Matching, Bioinformatics, 2010;26(4):470-477. (*Co-first author) # Explanation: # Num Residue index in the sequence. # AA One-letter amino acid code. # Sec Predicted three state secondary structure, # (H, S and R). # ConfSec Confidence of the predicted secondary structure. # S8 Predicted 8 state Shape String, # (R, S, U, V, A, K, G and T). # ConfS8 Confidence of the predicted 8 state Shape String. # S3 Predicted 3 state Shape String # (R, S, U, V -> S; A, K -> H; G, T - > T). # ConfS3 Confidence of the predicted 3 state Shape String. # //BEGIN query 1, id = query_0 # Num AA Sec ConfSec S8 ConfS8 S3 ConfS3 1 M R 0.874 A 0.000 H 0.000 2 K H 0.902 A 0.333 H 0.726 3 K H 0.611 A 0.750 H 0.797 4 L H 0.650 A 0.846 H 0.880 5 V H 0.891 A 0.882 H 0.911 6 T H 0.917 A 0.905 H 0.931 7 L H 0.919 A 0.923 H 0.946 8 L H 0.918 A 0.937 H 0.959 9 T H 0.941 A 0.943 H 0.988 10 I H 0.989 A 1.000 H 1.000 11 F H 0.991 A 1.000 H 1.000 12 C H 0.990 A 1.000 H 1.000 13 L H 0.888 A 0.872 H 0.902 14 A H 0.791 A 0.750 H 0.797 15 L H 0.724 A 0.667 H 0.726 16 L H 0.668 A 0.600 H 0.693 17 V H 0.551 A 0.467 H 0.611 18 G H 0.490 A 0.444 H 0.566 19 C R 0.720 K 0.500 H 0.700 20 G R 0.576 T 0.368 T 0.514 21 G R 0.611 S 0.467 S 0.611 22 T R 0.751 A 0.700 H 0.840 23 G R 0.565 S 0.800 S 0.840 24 T R 0.551 A 0.833 H 1.000 25 S R 0.611 S 0.750 S 0.797 26 D R 0.779 A 1.000 H 1.000 27 S R 0.695 A 1.000 H 1.000 28 D H 0.611 A 1.000 H 1.000 29 K H 0.541 A 0.500 H 0.582 30 K H 0.583 A 0.286 H 0.644 31 K H 0.587 A 0.333 H 0.630 32 V H 0.634 A 0.556 H 0.821 33 K S 0.631 K 0.727 H 0.778 34 V R 0.561 S 0.500 S 0.851 35 E R 0.821 A 0.522 H 0.788 36 P R 0.726 R 0.448 S 0.745 37 K S 0.668 S 0.457 S 0.816 38 A S 0.611 R 0.579 S 0.673 39 S R 0.575 S 0.477 S 0.739 40 N R 0.580 A 0.380 H 0.703 41 D R 0.812 K 0.263 H 0.560 42 S R 0.712 S 0.375 S 0.569 43 V S 0.790 S 0.768 S 0.938 44 K S 0.905 S 0.710 S 0.975 45 V S 0.951 S 0.985 S 1.000 46 E S 0.915 S 0.853 S 0.987 47 V S 0.868 S 0.833 S 0.973 48 K S 0.767 S 0.545 S 0.713 49 S R 0.695 T 0.318 T 0.504 50 G R 0.623 T 0.394 T 0.647 51 E R 0.724 S 0.657 S 0.833 52 Y S 0.901 S 0.667 S 0.947 53 S S 0.901 S 0.716 S 0.923 54 V S 0.712 S 0.652 S 0.960 55 I R 0.818 R 0.787 S 0.886 56 P R 0.728 R 0.509 S 0.621 57 E R 0.671 A 0.660 H 0.801 58 V R 0.656 R 0.373 S 0.624 59 T R 0.798 S 0.306 S 0.626 60 K R 0.798 R 0.451 S 0.608 61 D R 0.869 A 0.302 H 0.558 62 D R 0.903 K 0.273 H 0.559 63 S R 0.815 T 0.271 T 0.560 64 S R 0.593 R 0.415 S 0.695 65 T S 0.872 S 0.814 S 0.951 66 L S 0.964 S 0.831 S 0.952 67 A S 0.975 S 0.761 S 0.964 68 L S 0.976 S 0.889 S 1.000 69 T S 0.976 S 0.861 S 1.000 70 I S 0.998 S 0.861 S 0.989 71 N S 0.976 S 0.806 S 0.977 72 V S 0.976 S 0.875 S 1.000 73 S S 0.954 S 0.944 S 0.989 74 N S 0.832 S 0.861 S 0.977 75 T R 0.987 K 0.653 H 0.869 76 G R 0.976 R 0.625 S 0.845 77 K R 0.954 K 0.625 H 0.857 78 E R 0.899 S 0.667 S 0.833 79 K R 0.766 R 0.639 S 0.857 80 I S 0.877 S 0.819 S 0.977 81 V S 0.810 S 0.639 S 0.953 82 V S 0.645 S 0.792 S 0.941 83 D R 0.796 S 0.479 S 0.940 84 S R 0.623 A 0.686 H 0.767 85 Y R 0.645 A 0.638 H 0.863 86 A S 0.577 A 0.371 H 0.644 87 F S 0.498 S 0.414 S 0.681 88 E S 0.656 S 0.529 S 0.730 89 L S 0.711 S 0.542 S 0.773 90 Y S 0.766 S 0.653 S 0.821 91 E R 0.793 S 0.543 S 0.865 92 E R 0.880 A 0.735 H 0.823 93 D R 0.899 A 0.712 H 0.882 94 N R 0.922 T 0.723 T 0.801 95 G R 0.885 T 0.262 T 0.549 96 E R 0.618 R 0.508 S 0.814 97 K R 0.599 R 0.375 S 0.770 98 I R 0.643 S 0.413 S 0.808 99 K R 0.701 R 0.371 S 0.763 100 A H 0.525 A 0.547 H 0.650 101 E H 0.527 A 0.409 H 0.634 102 D H 0.506 A 0.368 H 0.582 103 V R 0.491 A 0.478 H 0.638 104 Y R 0.560 S 0.406 S 0.663 105 N R 0.705 S 0.485 S 0.721 106 R R 0.845 A 0.328 H 0.542 107 D R 0.793 S 0.333 S 0.562 108 I R 0.680 A 0.508 H 0.712 109 N R 0.680 A 0.565 H 0.763 110 T R 0.634 A 0.286 H 0.631 111 F R 0.662 S 0.348 S 0.713 112 E R 0.711 R 0.338 S 0.671 113 T R 0.617 A 0.449 H 0.613 114 E R 0.680 A 0.371 H 0.570 115 R R 0.550 A 0.352 H 0.601 116 L R 0.589 S 0.472 S 0.833 117 S R 0.866 R 0.611 S 0.893 118 A R 0.921 R 0.817 S 0.867 119 G R 0.952 T 0.943 T 0.976 120 K R 0.838 R 0.600 S 0.865 121 N S 0.748 S 0.686 S 0.926 122 V S 0.850 S 0.743 S 0.939 123 T S 0.895 S 0.714 S 0.828 124 G S 0.884 S 0.743 S 0.828 125 T S 0.963 S 0.771 S 1.000 126 I S 1.000 S 0.929 S 1.000 127 F S 1.000 S 0.887 S 1.000 128 F S 0.943 S 0.806 S 1.000 129 N S 0.777 S 0.694 S 0.965 130 I S 0.689 S 0.423 S 0.867 131 D R 0.875 S 0.451 S 0.588 132 P R 0.908 A 0.343 H 0.545 133 K R 0.929 A 0.457 H 0.570 134 K R 0.793 S 0.343 S 0.705 135 D R 0.606 S 0.521 S 0.855 136 Y S 0.866 S 0.847 S 1.000 137 K S 0.866 S 0.750 S 0.941 138 L S 0.866 S 0.625 S 0.965 139 V S 0.844 S 0.764 S 0.953 140 Y S 0.733 S 0.653 S 0.905 141 S R 0.689 S 0.542 S 0.989 142 Q R 0.744 R 0.681 S 0.785 143 E R 0.722 A 0.583 H 0.690 144 S R 0.673 A 0.408 H 0.661 145 Y R 0.646 S 0.294 S 0.671 146 G R 0.724 R 0.348 S 0.674 147 D R 0.800 S 0.262 S 0.561 148 S R 0.799 S 0.383 S 0.568 149 A R 0.716 A 0.617 H 0.740 150 E R 0.652 A 0.492 H 0.633 151 D R 0.664 S 0.417 S 0.597 152 E R 0.677 A 0.500 H 0.654 153 D R 0.658 R 0.338 S 0.582 154 I S 0.566 S 0.429 S 0.877 155 E S 0.702 S 0.580 S 0.875 156 L S 0.810 S 0.750 S 0.937 157 D S 0.803 S 0.455 S 0.921 158 L S 0.673 S 0.734 S 0.932 159 D R 0.795 S 0.559 S 0.881 160 L H 0.639 A 0.737 H 0.816 161 S H 0.625 A 0.821 H 0.890 162 K H 0.646 A 0.750 H 0.859 163 Y H 0.673 A 0.483 H 0.716 164 A H 0.632 A 0.621 H 0.731 165 D H 0.605 A 0.860 H 0.967 166 S H 0.666 A 0.356 H 0.648 167 T H 0.670 A 0.738 H 0.843 168 K H 0.678 A 0.746 H 0.903 169 V H 0.659 A 0.615 H 0.787 170 F H 0.570 A 0.597 H 0.666 171 D H 0.600 A 0.588 H 0.785 172 E H 0.657 A 0.386 H 0.595 173 S H 0.907 A 0.928 H 0.963 174 Q H 0.931 A 0.971 H 1.000 175 K H 0.965 A 0.972 H 0.989 176 A H 0.987 A 1.000 H 1.000 177 A H 0.987 A 0.986 H 1.000 178 T H 0.954 A 0.972 H 0.989 179 A H 0.965 A 0.986 H 1.000 180 F H 0.943 A 0.931 H 0.965 181 I H 0.855 A 0.833 H 0.869 182 D H 0.777 A 0.847 H 0.917 183 V H 0.689 A 0.611 H 0.726 184 Q H 0.550 A 0.479 H 0.588 185 F H 0.566 A 0.357 H 0.619 186 L S 0.606 A 0.406 H 0.601 187 G R 0.776 S 0.277 S 0.549 188 K R 0.812 A 0.369 H 0.549 189 E R 0.849 K 0.422 H 0.650 190 N R 0.809 S 0.238 S 0.548 191 E R 0.747 A 0.460 H 0.644 192 D R 0.661 A 0.500 H 0.703 193 Y H 0.739 A 0.703 H 0.851 194 D H 0.803 A 0.815 H 0.893 195 K H 0.821 A 0.824 H 0.886 196 L H 0.796 A 0.845 H 0.879 197 V H 0.639 A 0.667 H 0.788 198 G R 0.548 A 0.529 H 0.633 199 N R 0.724 A 0.636 H 0.791 200 N R 0.836 S 0.358 S 0.781 201 K H 0.700 A 0.738 H 0.827 202 D H 0.873 A 0.923 H 0.973 203 E H 0.889 A 0.924 H 0.999 204 T H 0.915 A 0.897 H 0.949 205 K H 0.950 A 0.956 H 0.987 206 K H 0.950 A 0.985 H 1.000 207 E H 0.929 A 1.000 H 1.000 208 I H 0.953 A 0.915 H 1.000 209 L H 0.964 A 0.944 H 0.988 210 E H 0.965 A 0.958 H 0.977 211 E H 0.954 A 0.958 H 0.989 212 Y H 0.943 A 0.917 H 0.989 213 Q H 0.965 A 0.972 H 1.000 214 K H 0.976 A 1.000 H 1.000 215 E H 0.965 A 0.958 H 1.000 216 N H 0.899 A 0.889 H 0.977 217 E H 0.785 A 0.831 H 0.903 218 D H 0.804 A 0.857 H 0.914 219 M H 0.686 A 0.681 H 0.813 220 L H 0.640 A 0.623 H 0.788 221 F H 0.588 A 0.353 H 0.684 222 S H 0.654 A 0.446 H 0.668 223 E R 0.743 A 0.308 H 0.549 224 L R 0.719 S 0.394 S 0.674 225 D R 0.800 S 0.369 S 0.840 226 L R 0.947 R 0.561 S 0.934 227 K R 0.973 R 0.881 S 0.948 228 D H 0.868 A 0.897 H 0.937 229 E H 0.950 A 0.971 H 1.000 230 D H 0.962 A 0.971 H 1.000 231 Y H 0.975 A 0.958 H 1.000 232 K H 0.975 A 1.000 H 1.000 233 K H 0.932 A 0.986 H 1.000 234 S H 0.932 A 0.958 H 1.000 235 F H 0.954 A 0.972 H 1.000 236 D H 0.943 A 0.986 H 1.000 237 S H 0.921 A 0.944 H 1.000 238 F H 0.954 A 0.944 H 0.988 239 T H 0.954 A 0.986 H 1.000 240 L H 0.886 A 0.900 H 0.939 241 V H 0.801 A 0.809 H 0.911 242 Q H 0.727 A 0.708 H 0.801 243 G H 0.629 A 0.625 H 0.744 244 K H 0.658 A 0.831 H 0.907 245 R H 0.553 A 0.468 H 0.652 246 A R 0.575 S 0.431 S 0.774 247 K S 0.563 S 0.600 S 0.787 248 F S 0.714 S 0.729 S 0.902 249 D S 0.774 S 0.696 S 0.913 250 K S 0.827 S 0.725 S 0.863 251 D S 0.748 S 0.600 S 0.779 252 L S 0.673 S 0.529 S 0.767 253 Y H 0.561 A 0.423 H 0.588 254 A H 0.516 A 0.479 H 0.576 255 Q H 0.532 A 0.500 H 0.644 256 F R 0.755 U 0.362 S 0.800 257 D R 0.755 A 0.464 H 0.564 258 D R 0.790 K 0.493 H 0.738 259 Q R 0.537 S 0.348 S 0.613 260 A S 0.725 S 0.529 S 0.853 261 V S 0.861 S 0.714 S 0.902 262 V S 0.907 S 0.914 S 0.951 263 S S 0.891 S 0.721 S 0.911 264 I S 0.882 S 0.841 S 0.987 265 D S 0.759 S 0.629 S 0.976 266 I S 0.611 S 0.471 S 0.816 267 E H 0.555 A 0.412 H 0.772 268 E H 0.583 A 0.463 H 0.768 269 A H 0.541 A 0.523 H 0.774 270 L R 0.629 S 0.348 S 0.791 271 S R 0.611 R 0.455 S 0.739 272 D H 0.647 A 0.738 H 0.827 273 Y H 0.680 A 0.742 H 0.882 274 A H 0.751 A 0.757 H 0.877 275 I H 0.861 A 0.797 H 0.913 276 E H 0.895 A 0.929 H 0.951 277 E H 0.963 A 0.957 H 0.988 278 L H 0.964 A 0.944 H 0.988 279 F H 0.964 A 0.972 H 1.000 280 Y H 0.964 A 0.944 H 1.000 281 E H 0.919 A 0.901 H 1.000 282 Y H 0.830 A 0.563 H 0.903 283 E H 0.807 A 0.871 H 0.926 284 E H 0.788 A 0.847 H 0.917 285 K H 0.744 A 0.778 H 0.893 286 Y H 0.556 K 0.423 H 0.806 287 M R 0.680 A 0.652 H 0.751 288 D R 0.748 K 0.343 H 0.705 289 S R 0.816 S 0.300 S 0.619 290 S H 0.641 A 0.561 H 0.687 291 E H 0.600 A 0.731 H 0.833 292 D H 0.600 A 0.588 H 0.747 293 Y H 0.842 A 0.776 H 0.884 294 E H 0.880 A 0.882 H 0.949 295 G H 0.925 A 0.940 H 0.961 296 A H 0.961 A 0.956 H 1.000 297 E H 0.939 A 0.971 H 0.987 298 K H 0.974 A 1.000 H 1.000 299 Y H 0.918 A 0.914 H 1.000 300 A H 0.918 A 0.971 H 1.000 301 Y H 0.975 A 1.000 H 1.000 302 S H 0.830 A 0.930 H 0.988 303 K H 0.796 A 0.761 H 0.976 304 Y H 0.733 A 0.667 H 0.762 305 K H 0.722 A 0.819 H 0.869 306 E H 0.832 A 0.875 H 0.953 307 I H 0.866 A 0.903 H 0.941 308 L H 0.855 A 0.889 H 0.953 309 E H 0.639 A 0.873 H 0.940 310 K H 0.639 A 0.465 H 0.794 311 S R 0.816 S 0.470 S 0.908 312 K R 0.806 R 0.508 S 0.903 313 L R 0.756 S 0.542 S 0.881 314 K R 0.687 R 0.364 S 0.793 315 G R 0.678 G 0.352 T 0.598 316 E R 0.806 S 0.327 S 0.599 317 S R 0.818 S 0.481 S 0.630 318 E R 0.828 A 0.316 H 0.620 319 D S 0.618 S 0.379 S 0.671 320 L S 0.815 S 0.727 S 0.882 321 L S 0.870 S 0.638 S 0.925 322 L S 0.975 S 0.944 S 1.000 323 Y S 0.954 S 0.736 S 0.989 324 L S 0.943 S 0.746 S 0.952 325 E S 0.919 S 0.817 S 0.976 326 K S 0.729 R 0.521 S 0.916 327 K S 0.583 S 0.507 S 0.713 328 D R 0.931 T 0.577 T 0.685 329 G R 0.952 T 0.843 T 0.914 330 K S 0.714 S 0.667 S 0.963 331 W S 0.921 R 0.500 S 1.000 332 N S 0.863 S 0.873 S 0.964 333 V S 0.804 S 0.671 S 0.939 334 D R 0.736 S 0.687 S 1.000 335 L R 0.649 A 0.687 H 0.838 336 S R 0.760 A 0.587 H 0.794 337 L R 0.726 A 0.387 H 0.693 338 D R 0.756 A 0.387 H 0.666 339 D R 0.735 S 0.333 S 0.603 340 N H 0.703 A 0.734 H 0.811 341 K H 0.812 A 0.859 H 0.986 342 Y H 0.830 A 0.875 H 0.932 343 V H 0.879 A 0.871 H 0.929 344 I H 0.946 A 0.946 H 0.966 345 S H 0.966 A 0.979 H 0.995 346 A H 0.951 A 0.950 H 1.000 347 F H 0.933 A 0.844 H 0.986 348 I H 0.708 A 0.708 H 0.797 349 G R 0.838 G 0.562 T 0.690 350 D R 0.938 T 0.375 T 0.797 351 I R 0.874 G 0.000 T 0.000 //END