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Results

  • Submitted: 2015-10-13 09:47:19
  • Status: Finished
  • Waiting time: 0 sec
  • Running Time: 4 mins
Results of your prediction with jobid: example_1seq (jobname: test one seq)

Zipped folder of your result can be found in example_1seq.zip

Dumped prediction in one text file can be found in query.frag1d.txt

The sequence(s) you submitted can be found in query.raw.fa


Sequence and predicted secondary structure and shape strings

Description of the result:
Num Residue index in the sequence
AA One-letter amino acid code
Sec Predicted three state secondary structure, (H, S and R).
ConfSec Confidence of the predicted secondary structure.
S8 Predicted 8 state Shape String, (R, S, U, V, A, K, G and T).
ConfS8 Confidence of the predicted 8 state Shape String.
S3 Predicted 3 state Shape String (R, S, U and V to S; A and K to H; G and T to T).
ConfS3 Confidence of the predicted 3 state Shape String.

No. AA Sec ConfSec S8 ConfS8 S3 ConfS3
1 G R 0.874 T 0.750 T 1.000
2 S R 0.891 R 0.429 S 0.644
3 H R 0.764 S 0.643 S 0.890
4 M R 0.671 S 0.692 S 0.979
5 Q R 0.668 R 0.629 S 0.963
6 A R 0.745 R 0.571 S 0.951
7 E S 0.886 R 0.469 S 0.890
8 I S 0.889 S 0.554 S 0.905
9 L S 0.944 S 0.873 S 0.985
10 L S 1.000 S 0.921 S 0.999
11 T S 0.993 S 0.918 S 1.000
12 L S 1.000 S 0.933 S 0.998
13 K S 0.953 S 0.700 S 0.984
14 L S 0.980 S 0.780 S 1.000
15 Q R 0.964 T 0.661 T 0.765
16 Q R 0.979 T 0.717 T 0.783
17 K S 0.769 S 0.617 S 0.826
18 L S 0.926 R 0.600 S 0.926
19 F S 0.863 A 0.443 H 0.618
20 A S 0.841 S 0.774 S 0.901
21 D R 0.894 S 0.810 S 0.944
22 P H 0.834 A 0.984 H 0.999
23 R H 0.871 A 0.859 H 0.999
24 R H 0.908 A 0.891 H 0.932
25 I H 0.920 A 0.922 H 0.945
26 S H 0.957 A 0.969 H 0.986
27 L H 0.970 A 0.984 H 0.999
28 L H 0.982 A 1.000 H 1.000
29 K H 0.957 A 0.984 H 0.999
30 H H 0.883 A 0.937 H 0.959
31 I H 0.896 A 0.922 H 0.959
32 A H 0.920 A 0.953 H 0.972
33 L H 0.881 A 0.984 H 0.999
34 S H 0.853 A 0.806 H 0.985
35 G R 0.967 T 0.869 T 0.956
36 S R 0.913 S 0.800 S 0.912
37 I H 0.821 A 0.833 H 0.869
38 S H 0.874 A 0.883 H 0.912
39 Q H 0.966 A 0.983 H 0.998
40 G H 0.966 A 0.983 H 0.998
41 A H 0.966 A 0.983 H 0.998
42 K H 0.980 A 1.000 H 1.000
43 D H 0.942 A 1.000 H 1.000
44 A R 0.605 K 0.889 H 1.000
45 G R 0.957 T 0.953 T 0.972
46 I R 0.970 S 0.766 S 0.959
47 S R 0.920 R 0.875 S 0.932
48 Y H 0.896 A 0.969 H 0.986
49 K H 0.945 A 1.000 H 1.000
50 S H 0.933 A 0.953 H 1.000
51 A H 0.970 A 0.984 H 0.999
52 W H 0.982 A 0.984 H 1.000
53 D H 0.981 A 1.000 H 1.000
54 A H 0.981 A 1.000 H 1.000
55 I H 0.969 A 1.000 H 1.000
56 N H 0.956 A 1.000 H 1.000
57 E H 0.969 A 0.984 H 1.000
58 M H 0.956 A 0.968 H 0.985
59 N H 0.919 A 0.651 H 0.971
60 Q H 0.944 A 0.651 H 0.999
61 L H 0.931 A 0.889 H 0.971
62 S H 0.587 A 0.547 H 0.623
63 E R 0.957 A 0.476 H 0.562
64 H R 0.881 S 0.857 S 0.971
65 I R 0.747 S 0.562 S 0.959
66 L R 0.686 A 0.734 H 0.784
67 V S 0.896 S 0.812 S 0.878
68 E S 0.871 S 0.797 S 0.865
69 R S 0.809 R 0.687 S 0.851
70 A R 0.809 R 0.413 S 0.849
71 T R 0.806 A 0.269 H 0.682
72 G R 0.889 G 0.333 T 0.582
73 G R 0.975 R 0.488 S 0.612
74 K R 0.729 A 0.458 H 0.582
75 G R 0.763 G 0.208 T 0.511
76 G R 0.897 T 0.375 T 0.546
77 G R 0.751 S 0.348 S 0.489
78 G R 0.595 G 0.273 T 0.504
79 A S 0.902 R 0.443 S 0.914
80 V S 0.941 S 0.869 S 0.914
81 L S 0.931 R 0.825 S 0.944
82 T R 0.919 R 0.873 S 0.985
83 R H 0.894 A 0.921 H 0.985
84 Y H 0.919 A 0.935 H 0.999
85 G H 0.969 A 0.984 H 0.999
86 Q H 0.981 A 1.000 H 1.000
87 R H 0.969 A 1.000 H 1.000
88 L H 0.970 A 1.000 H 1.000
89 I H 0.982 A 1.000 H 1.000
90 Q H 0.982 A 1.000 H 1.000
91 L H 0.982 A 1.000 H 1.000
92 Y H 0.982 A 1.000 H 1.000
93 D H 0.981 A 1.000 H 1.000
94 L H 0.980 A 0.984 H 1.000
95 L H 0.968 A 0.967 H 0.984
96 A H 0.977 A 0.966 H 1.000
97 Q H 0.976 A 0.983 H 0.998
98 I H 0.961 A 1.000 H 1.000
99 Q H 0.946 A 0.964 H 1.000
100 Q H 0.959 A 0.981 H 1.000
101 K H 0.972 A 0.981 H 0.997
102 A H 0.971 A 0.981 H 1.000
103 F H 0.955 A 0.942 H 1.000
104 D H 0.951 A 0.980 H 1.000
105 V H 0.916 A 0.833 H 0.959
106 L H 0.826 A 0.870 H 0.938
107 S H 0.786 A 0.822 H 0.898
108 D R 0.721 A 0.591 H 0.758
109 D R 0.611 K 0.595 H 0.828
110 D R 0.726 A 0.550 H 0.776
111 A R 0.731 R 0.375 S 0.561
112 L R 0.891 R 0.400 S 0.711
113 P R 0.958 R 0.683 S 0.908
114 L H 0.721 A 0.682 H 0.758
115 N H 0.751 A 0.733 H 0.840
116 S H 0.804 A 0.622 H 0.898
117 L H 0.839 A 0.844 H 0.898
118 L H 0.856 A 0.911 H 0.955
119 A H 0.911 A 0.913 H 0.994
120 A H 0.897 A 0.978 H 0.994
121 I H 0.877 A 0.804 H 0.975
122 S H 0.856 A 0.933 H 0.993
123 R H 0.757 A 0.761 H 0.956
124 F H 0.636 K 0.437 H 0.779
125 S R 0.825 A 0.620 H 0.789
126 L S 0.551 R 0.471 S 0.591
127 Q S 0.513 S 0.500 S 0.686
128 T S 0.527 S 0.544 S 0.711
129 S R 0.883 K 0.492 H 0.862
130 A R 0.818 R 0.761 S 0.846
131 R R 0.850 A 0.545 H 0.882
132 N S 0.740 S 0.843 S 0.926
133 Q S 0.933 S 0.606 S 0.916
134 W S 0.955 S 0.849 S 0.954
135 F S 0.944 R 0.833 S 0.989
136 G S 0.966 S 0.904 S 0.930
137 T S 1.000 S 0.904 S 1.000
138 I S 0.988 R 0.918 S 1.000
139 T S 0.781 S 0.389 S 0.738
140 A S 0.781 S 0.671 S 0.965
141 R R 0.781 R 0.685 S 0.965
142 D R 0.704 K 0.589 H 0.671
143 H R 0.693 S 0.603 S 0.954
144 D R 0.965 A 0.514 H 0.630
145 D R 0.921 R 0.583 S 0.666
146 V R 0.921 R 0.338 S 0.637
147 Q R 0.667 S 0.861 S 0.953
148 Q R 0.700 V 0.597 S 0.917
149 H S 0.966 S 0.639 S 0.989
150 V S 0.988 S 0.959 S 0.989
151 D S 0.999 S 0.945 S 1.000
152 V S 1.000 S 0.958 S 0.989
153 L S 1.000 S 0.551 S 1.000
154 L S 0.728 R 0.618 S 0.974
155 A R 0.947 A 0.662 H 0.735
156 D R 0.958 A 0.333 H 0.698
157 G R 0.946 T 0.862 T 0.946
158 K R 0.910 R 0.381 S 0.576
159 T S 0.661 S 0.594 S 0.986
160 R S 0.983 R 0.562 S 0.972
161 L S 0.971 S 0.894 S 0.960
162 K S 0.985 S 0.897 S 0.949
163 V S 0.986 S 0.914 S 0.963
164 A S 0.987 R 0.662 S 0.964
165 I S 0.770 S 0.932 S 0.954
166 T R 0.651 R 0.875 S 0.953
167 A H 0.919 A 0.986 H 1.000
168 Q H 0.918 A 0.929 H 0.988
169 S H 0.928 A 0.928 H 0.963
170 G H 0.937 A 0.821 H 0.961
171 A H 0.875 A 0.970 H 0.986
172 R H 0.911 A 0.955 H 1.000
173 L H 0.659 A 0.818 H 0.986
174 G R 0.983 T 0.909 T 0.934
175 L R 0.984 S 0.418 S 1.000
176 D R 0.974 R 0.529 S 1.000
177 E R 0.975 R 0.986 S 1.000
178 G R 0.987 T 1.000 T 1.000
179 K R 0.976 R 0.694 S 1.000
180 E S 1.000 R 0.918 S 0.989
181 V S 0.988 S 0.945 S 0.965
182 L S 0.988 S 0.945 S 0.965
183 I S 0.966 S 0.562 S 0.977
184 L S 0.944 S 0.822 S 0.918
185 L S 0.715 S 0.822 S 0.871
186 K R 0.857 R 0.808 S 0.906
187 A H 0.830 A 0.775 H 0.855
188 P H 0.767 A 0.623 H 0.875
189 W H 0.747 K 0.448 H 0.794
190 V R 0.666 S 0.800 S 0.986
191 G S 0.980 R 0.484 S 0.957
192 I S 0.963 S 0.741 S 0.938
193 T S 0.849 S 0.702 S 0.922
194 Q R 0.776 K 0.392 H 0.726
195 D R 0.879 S 0.654 S 0.847
196 E H 0.656 A 0.647 H 0.810
197 A H 0.596 A 0.706 H 0.759
198 V H 0.566 A 0.615 H 0.698
199 A H 0.569 A 0.558 H 0.648
200 Q H 0.553 A 0.559 H 0.663
201 N R 0.849 K 0.476 H 0.876
202 A R 0.878 R 0.742 S 0.791
203 D R 0.884 A 0.597 H 0.910
204 N S 0.695 S 0.806 S 0.881
205 Q S 0.901 S 0.542 S 0.857
206 L S 0.955 S 0.877 S 0.977
207 P S 0.966 R 0.808 S 0.977
208 G S 0.966 S 0.877 S 0.906
209 I S 0.988 S 0.890 S 1.000
210 I S 0.988 R 0.959 S 0.989
211 S S 0.781 A 0.444 H 0.750
212 H S 0.770 S 0.671 S 0.965
213 I S 0.781 S 0.699 S 0.977
214 E S 0.733 S 0.597 S 0.726
215 R S 0.711 S 0.597 S 0.965
216 G R 0.987 R 0.549 S 0.661
217 A R 0.963 A 0.614 H 0.693
218 E R 0.963 A 0.304 H 0.626
219 Q S 0.657 S 0.871 S 0.951
220 C S 0.691 S 0.586 S 0.926
221 E S 0.953 R 0.614 S 0.988
222 V S 1.000 S 0.986 S 1.000
223 L S 1.000 S 0.930 S 1.000
224 M S 1.000 S 0.986 S 1.000
225 A S 1.000 R 0.638 S 1.000
226 L S 0.798 R 0.588 S 1.000
227 P R 0.972 A 0.597 H 0.679
228 D R 0.983 K 0.477 H 0.708
229 G R 0.959 T 0.864 T 0.908
230 Q R 0.839 R 0.803 S 0.947
231 T S 0.971 S 0.788 S 0.960
232 L S 0.984 S 0.866 S 0.935
233 C S 0.997 S 0.870 S 0.913
234 A S 0.986 S 0.900 S 0.976
235 T S 0.998 S 0.732 S 0.976
236 V S 0.777 S 0.972 S 0.989
237 P S 0.689 R 0.877 S 1.000
238 V H 0.863 A 0.915 H 0.988
239 N H 0.882 A 0.913 H 0.963
240 E H 0.937 A 0.925 H 0.974
241 A H 0.947 A 0.677 H 0.986
242 T H 0.611 A 0.879 H 1.000
243 S R 0.755 A 0.576 H 0.674
244 L R 0.873 R 0.523 S 0.854
245 Q R 0.923 S 0.646 S 0.920
246 Q R 0.949 R 0.925 S 0.948
247 G R 0.985 T 0.971 T 0.987
248 Q R 0.987 R 0.657 S 1.000
249 N S 1.000 R 0.972 S 1.000
250 V S 1.000 S 1.000 S 1.000
251 T S 1.000 S 0.959 S 1.000
252 A S 0.999 S 0.541 S 1.000
253 Y S 0.978 S 0.905 S 0.966
254 F S 0.744 S 0.889 S 0.941
255 N R 0.886 R 0.887 S 0.976
256 A H 0.824 A 0.826 H 0.863
257 D H 0.812 K 0.683 H 0.998
258 S H 0.791 A 0.423 H 0.814
259 V S 0.721 S 0.636 S 0.954
260 I S 1.000 S 0.667 S 0.989
261 I S 1.000 R 0.519 S 0.981
262 A S 0.831 S 0.750 S 0.969
263 T S 0.644 S 0.636 S 0.778
264 L R 0.639 R 0.667 S 0.726
265 C R 0.874 G 0.000 T 0.000
 
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